ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT1G60010	D-ribose-binding periplasmic protein
ath-u.5	AT1G60010	D-ribose-binding periplasmic protein
ath-r.7	AT1G60010	D-ribose-binding periplasmic protein
ath-m.9	AT1G60010	D-ribose-binding periplasmic protein
ath-e.2	AT1G60010	D-ribose-binding periplasmic protein
ath-m.4.bio	AT1G60010	D-ribose-binding periplasmic protein
ath-m.4.hor	AT1G60010	D-ribose-binding periplasmic protein
ath-m.4.lig	AT1G60010	D-ribose-binding periplasmic protein
ath-m.4.str	AT1G60010	D-ribose-binding periplasmic protein
ath-u.5	AT5G50090	D-ribose-binding periplasmic protein
ath-u.5	AT5G62900	basic-leucine zipper transcription factor K
bra-r.6	103858432	uncharacterized LOC103858432
bra-r.6	103829391	uncharacterized LOC103829391
bra-r.6	103838563	uncharacterized LOC103838563
bna-r.1	BNAA06G22350D	uncharacterized BNAA06G22350D
bna-r.1	106417595	uncharacterized LOC106417595
ghi-r.1	107943707	uncharacterized LOC107943707
ghi-r.1	107912042	uncharacterized LOC107912042
cit-r.1	102622475	uncharacterized LOC102622475
cit-r.1	102631241	uncharacterized LOC102631241
gma-u.5	100813476	uncharacterized LOC100813476
gma-u.5	100782731	uncharacterized LOC100782731
vvi-u.5	100265593	uncharacterized LOC100265593
vvi-u.5	100250100	uncharacterized LOC100250100
ppo-u.5	7483478	uncharacterized LOC7483478
ppo-u.5	7471481	uncharacterized LOC7471481
mtr-u.5	11412153	uncharacterized LOC11412153
mtr-u.5	25489551	uncharacterized LOC25489551
mtr-u.5	11440186	uncharacterized LOC11440186
sly-u.5	101254182	uncharacterized LOC101254182
sly-u.5	101263113	uncharacterized LOC101263113
sly-u.5	101245768	uncharacterized LOC101245768
sot-r.1	102578241	uncharacterized LOC102578241
sot-r.1	102586791	uncharacterized LOC102586791
nta-r.1	107822481	uncharacterized LOC107822481
nta-r.1	107813502	uncharacterized LOC107813502
osa-u.5	4330688	uncharacterized LOC4330688
osa-u.5	4340599	uncharacterized LOC4340599
osa-u.5	4345590	uncharacterized LOC4345590
zma-u.5	100277896	uncharacterized LOC100277896
zma-u.5	100272587	uncharacterized LOC100272587
zma-u.5	100275410	uncharacterized LOC100275410
tae-r.2	123103650	uncharacterized LOC123103650
tae-r.2	123090133	uncharacterized LOC123090133
hvu-r.1	123409639	uncharacterized LOC123409639
hvu-r.1	123408020	uncharacterized LOC123408020
hvu-r.1	123401848	uncharacterized LOC123401848
sbi-r.1	8075622	uncharacterized LOC8075622
sbi-r.1	8056202	uncharacterized LOC8056202
sbi-r.1	8065546	uncharacterized LOC8065546
bdi-r.1	100821553	uncharacterized LOC100821553
bdi-r.1	100839403	uncharacterized LOC100839403

Top 50 coexpressed genes to AT1G60010 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G60010 (ath-m.4.tis coexpression data)

CoexMap"842295"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0009620 [list] [network] response to fungus

(400 genes)

IEP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_564752.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, cysk 1

(predict for NP_564752.1)

Subcellular
localization
TargetP

other 8

(predict for NP_564752.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT1G60010	ath-u.5 for AT1G60010	ath-r.7 for AT1G60010	ath-m.9 for AT1G60010	ath-e.2 for AT1G60010	ath-m.4.bio for AT1G60010	ath-m.4.hor for AT1G60010	ath-m.4.lig for AT1G60010	ath-m.4.str for AT1G60010	ath-u.5 for AT5G50090	ath-u.5 for AT5G62900	bra-r.6 for 103858432	bra-r.6 for 103829391	bra-r.6 for 103838563	bna-r.1 for BNAA06G22350D	bna-r.1 for 106417595	ghi-r.1 for 107943707	ghi-r.1 for 107912042	cit-r.1 for 102622475	cit-r.1 for 102631241	gma-u.5 for 100813476	gma-u.5 for 100782731	vvi-u.5 for 100265593	vvi-u.5 for 100250100	ppo-u.5 for 7483478	ppo-u.5 for 7471481	mtr-u.5 for 11412153	mtr-u.5 for 25489551	mtr-u.5 for 11440186	sly-u.5 for 101254182	sly-u.5 for 101263113	sly-u.5 for 101245768	sot-r.1 for 102578241	sot-r.1 for 102586791	nta-r.1 for 107822481	nta-r.1 for 107813502	osa-u.5 for 4330688	osa-u.5 for 4340599	osa-u.5 for 4345590	zma-u.5 for 100277896	zma-u.5 for 100272587	zma-u.5 for 100275410	tae-r.2 for 123103650	tae-r.2 for 123090133	hvu-r.1 for 123409639	hvu-r.1 for 123408020	hvu-r.1 for 123401848	sbi-r.1 for 8075622	sbi-r.1 for 8056202	sbi-r.1 for 8065546	bdi-r.1 for 100821553	bdi-r.1 for 100839403

Ortholog

Ortholog ID: 856

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

D-ribose-binding periplasmic protein

basic-leucine zipper transcription factor K

uncharacterized LOC103858432

uncharacterized LOC103829391

uncharacterized LOC103838563

uncharacterized LOC106424871

uncharacterized LOC106449434

uncharacterized LOC111211603

uncharacterized LOC107943707

uncharacterized LOC107912042

uncharacterized LOC107922757

uncharacterized LOC102622475

uncharacterized LOC102631241

uncharacterized LOC100500500

uncharacterized LOC100265593

uncharacterized LOC100250100

uncharacterized LOC7483478

uncharacterized LOC7471481

uncharacterized LOC25489551

uncharacterized LOC11440186

uncharacterized LOC11411027

uncharacterized LOC101254182

uncharacterized LOC101263113

uncharacterized LOC101245768

uncharacterized LOC102578241

uncharacterized LOC102586791

uncharacterized LOC107813502

uncharacterized LOC107780942

uncharacterized LOC4330688

uncharacterized LOC4340599

uncharacterized LOC4346935

uncharacterized LOC100277896

uncharacterized LOC100278655

uncharacterized LOC100278604

uncharacterized LOC123145519

uncharacterized LOC123124759

uncharacterized LOC123408020

uncharacterized LOC123401848

uncharacterized LOC123395374

uncharacterized LOC8075622

uncharacterized LOC8056202

uncharacterized LOC8065546

uncharacterized LOC100821553

uncharacterized LOC100844391

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna02010	ABC transporters	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00860	Porphyrin metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00740	Riboflavin metabolism	3
mtr04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00100	Steroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	5
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3
zma00230	Purine metabolism	2
zma00250	Alanine, aspartate and glutamate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00500	Starch and sucrose metabolism	4
zma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00908	Zeatin biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	3
sbi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

842295

835073

836410

103858432

103829391

103838563

106424871

106449434

111211603

107943707

107912042

107922757

102622475

102631241

100500500

100265593

100250100

7483478

7471481

25489551

11440186

11411027

101254182

101263113

101245768

102578241

102586791

107813502

107780942

4330688

4340599

4346935

100277896

100278655

100278604

123145519

123124759

123408020

123401848

123395374

8075622

8056202

8065546

100821553

100844391

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	2	2	2	2	2	2	3	3	2	2	3	3	2	3	3	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G60010 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT1G60010 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**