ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT1G65000	F-box only protein
ath-u.5	AT1G65000	F-box only protein
ath-r.7	AT1G65000	F-box only protein
ath-m.9	AT1G65000	F-box only protein
ath-e.2	AT1G65000	F-box only protein
ath-m.4.bio	AT1G65000	F-box only protein
ath-m.4.hor	AT1G65000	F-box only protein
ath-m.4.lig	AT1G65000	F-box only protein
ath-m.4.str	AT1G65000	F-box only protein
ath-u.5	AT5G38060	carboxypeptidase
bra-r.6	103850098	uncharacterized LOC103850098
bra-r.6	103831046	uncharacterized LOC103831046
bna-r.1	106356641	uncharacterized LOC106356641
bna-r.1	106426235	uncharacterized LOC106426235
bna-r.1	106409103	uncharacterized LOC106409103
ghi-r.1	121219357	uncharacterized LOC121219357
ghi-r.1	107919670	uncharacterized LOC107919670
ghi-r.1	107893855	uncharacterized LOC107893855
cit-r.1	102614560	uncharacterized LOC102614560
cit-r.1	102630968	uncharacterized LOC102630968
gma-u.5	100526944	uncharacterized LOC100526944
gma-u.5	100775288	uncharacterized LOC100775288
vvi-u.5	100254491	uncharacterized LOC100254491
vvi-u.5	100248486	uncharacterized LOC100248486
ppo-u.5	112323799	uncharacterized LOC112323799
ppo-u.5	18099415	uncharacterized LOC18099415
mtr-u.5	25494439	uncharacterized LOC25494439
mtr-u.5	11431896	uncharacterized LOC11431896
sly-u.5	101254057	uncharacterized LOC101254057
sly-u.5	101246518	uncharacterized LOC101246518
sot-r.1	102587701	uncharacterized LOC102587701
sot-r.1	102600471	uncharacterized LOC102600471
nta-r.1	107800848	uncharacterized LOC107800848
nta-r.1	142180302	uncharacterized LOC142180302
osa-u.5	107276725	uncharacterized LOC107276725
osa-u.5	9266050	uncharacterized LOC9266050
zma-u.5	100278071	uncharacterized LOC100278071
tae-r.2	123087484	uncharacterized LOC123087484
tae-r.2	123114456	uncharacterized LOC123114456
tae-r.2	123123924	uncharacterized LOC123123924
hvu-r.1	123407917	uncharacterized LOC123407917
hvu-r.1	123399657	uncharacterized LOC123399657
sbi-r.1	8059250	uncharacterized LOC8059250
sbi-r.1	8071010	uncharacterized LOC8071010
bdi-r.1	100827593	uncharacterized LOC100827593
cre-r.1	CHLRE_13g605700v5	uncharacterized protein

Top 50 coexpressed genes to AT1G65000 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G65000 (ath-m.4.tis coexpression data)

CoexMap"842808"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_176680.2 [sequence] [blastp]

Subcellular
localization
wolf

mito 4, chlo 4, nucl 1

(predict for NP_176680.2)

Subcellular
localization
TargetP

other 8

(predict for NP_176680.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT1G65000	ath-u.5 for AT1G65000	ath-r.7 for AT1G65000	ath-m.9 for AT1G65000	ath-e.2 for AT1G65000	ath-m.4.bio for AT1G65000	ath-m.4.hor for AT1G65000	ath-m.4.lig for AT1G65000	ath-m.4.str for AT1G65000	ath-u.5 for AT5G38060	bra-r.6 for 103850098	bra-r.6 for 103831046	bna-r.1 for 106356641	bna-r.1 for 106426235	bna-r.1 for 106409103	ghi-r.1 for 121219357	ghi-r.1 for 107919670	ghi-r.1 for 107893855	cit-r.1 for 102614560	cit-r.1 for 102630968	gma-u.5 for 100526944	gma-u.5 for 100775288	vvi-u.5 for 100254491	vvi-u.5 for 100248486	ppo-u.5 for 112323799	ppo-u.5 for 18099415	mtr-u.5 for 25494439	mtr-u.5 for 11431896	sly-u.5 for 101254057	sly-u.5 for 101246518	sot-r.1 for 102587701	sot-r.1 for 102600471	nta-r.1 for 107800848	nta-r.1 for 142180302	osa-u.5 for 107276725	osa-u.5 for 9266050	zma-u.5 for 100278071	tae-r.2 for 123087484	tae-r.2 for 123114456	tae-r.2 for 123123924	hvu-r.1 for 123407917	hvu-r.1 for 123399657	sbi-r.1 for 8059250	sbi-r.1 for 8071010	bdi-r.1 for 100827593	cre-r.1 for CHLRE_13g605700v5

Ortholog

Ortholog ID: 4625

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

F-box only protein

carboxypeptidase

uncharacterized LOC103850098

uncharacterized LOC103831046

uncharacterized LOC106356641

uncharacterized LOC106426235

uncharacterized LOC106409103

uncharacterized LOC121219357

uncharacterized LOC107919670

uncharacterized LOC107893855

uncharacterized LOC102614560

uncharacterized LOC102630968

uncharacterized LOC100526944

uncharacterized LOC100775288

uncharacterized LOC100254491

uncharacterized LOC100248486

uncharacterized LOC112323799

uncharacterized LOC18099415

uncharacterized LOC25494439

uncharacterized LOC11431896

uncharacterized LOC101254057

uncharacterized LOC101246518

uncharacterized LOC102587701

uncharacterized LOC102600471

uncharacterized LOC107800848

uncharacterized LOC142180302

uncharacterized LOC107276725

uncharacterized LOC9266050

uncharacterized LOC100278071

uncharacterized LOC123087484

uncharacterized LOC123147856

uncharacterized LOC123407917

uncharacterized LOC123399657

uncharacterized LOC8059250

uncharacterized LOC8071010

uncharacterized LOC100827593

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00902	Monoterpenoid biosynthesis	2
bna00770	Pantothenate and CoA biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00770	Pantothenate and CoA biosynthesis	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	5
ghi04130	SNARE interactions in vesicular transport	4
ghi00970	Aminoacyl-tRNA biosynthesis	2
ghi00240	Pyrimidine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	3
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2
gma00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	3
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	3
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	5
zma03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	4
hvu00600	Sphingolipid metabolism	3
hvu04142	Lysosome	3
hvu04141	Protein processing in endoplasmic reticulum	3
hvu04144	Endocytosis	3

Expression

Expression pattern

Entrez Gene ID^*

842808

833786

103850098

103831046

106356641

106426235

106409103

121219357

107919670

107893855

102614560

102630968

100526944

100775288

100254491

100248486

112323799

18099415

25494439

11431896

101254057

101246518

102587701

102600471

107800848

142180302

107276725

9266050

100278071

123087484

123147856

123407917

123399657

8059250

8071010

100827593

5724686

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	2	3	3	2	2	2	2	2	2	2	2	2	1	3	2	2	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G65000 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT1G65000 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**