ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.tis	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-u.5	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-r.7	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.9	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-e.2	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.bio	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.hor	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.lig	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-m.4.str	AT1G65690	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
ath-u.5	AT1G54540	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
bra-r.6	103838730	NDR1/HIN1-like protein 6
bra-r.6	103852291	NDR1/HIN1-like protein 6
bra-r.6	103868314	NDR1/HIN1-like protein 6
bna-r.1	106345578	NDR1/HIN1-like protein 6
bna-r.1	106392178	NDR1/HIN1-like protein 6
bna-r.1	106379446	NDR1/HIN1-like protein 6
ghi-r.1	107891384	NDR1/HIN1-like protein 6
cit-r.1	102613760	NDR1/HIN1-like protein 6
gma-u.5	100778798	LEA domain-containing protein
gma-u.5	100781699	NDR1/HIN1-like protein 6
vvi-u.5	100244374	NDR1/HIN1-like protein 6
vvi-u.5	100249528	NDR1/HIN1-like protein 6
ppo-u.5	7494378	NDR1/HIN1-like protein 6
mtr-u.5	25484544	NDR1/HIN1-like protein 6
mtr-u.5	11426665	NDR1/HIN1-like protein 6
mtr-u.5	25489194	NDR1/HIN1-like protein 6
sly-u.5	101262768	NDR1/HIN1-like protein 6
sly-u.5	104645573	NDR1/HIN1-like protein
sot-r.1	102600044	protein YLS9-like
sot-r.1	102578226	protein YLS9-like
sot-r.1	107060790	protein YLS9-like
nta-r.1	107809564	NDR1/HIN1-like protein 6
nta-r.1	107809495	NDR1/HIN1-like protein 6
nta-r.1	107799428	NDR1/HIN1-like protein 6
zma-u.5	100384448	uncharacterized LOC100384448
zma-u.5	100383182	uncharacterized LOC100383182
zma-u.5	100281231	NHL25
tae-r.2	123050645	NDR1/HIN1-like protein 6
tae-r.2	123186575	NDR1/HIN1-like protein 6
tae-r.2	123181268	NDR1/HIN1-like protein 6
hvu-r.1	123431190	NDR1/HIN1-like protein 6
hvu-r.1	123410012	NDR1/HIN1-like protein 6
sbi-r.1	8076462	NDR1/HIN1-like protein 6
sbi-r.1	8079001	NDR1/HIN1-like protein 6
sbi-r.1	8067112	NDR1/HIN1-like protein 6
bdi-r.1	100823949	NDR1/HIN1-like protein 6
bdi-r.1	100846419	NDR1/HIN1-like protein 6

Top 50 coexpressed genes to AT1G65690 (ath-m.4.tis coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G65690 (ath-m.4.tis coexpression data)

CoexMap"842880"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010116 [list] [network] positive regulation of abscisic acid biosynthetic process	(8 genes)	IMP
GO:1902074 [list] [network] response to salt	(50 genes)	IMP
GO:0009737 [list] [network] response to abscisic acid	(550 genes)	IEP IMP
GO:0006970 [list] [network] response to osmotic stress	(578 genes)	IMP

GO CC

GO:0005829 [list] [network] cytosol	(2593 genes)	IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	IDA

GO MF

Protein

NP_564862.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, nucl 2, E.R. 1, cysk 1

(predict for NP_564862.1)

Subcellular
localization
TargetP

chlo 6, other 3

(predict for NP_564862.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.tis for AT1G65690	ath-u.5 for AT1G65690	ath-r.7 for AT1G65690	ath-m.9 for AT1G65690	ath-e.2 for AT1G65690	ath-m.4.bio for AT1G65690	ath-m.4.hor for AT1G65690	ath-m.4.lig for AT1G65690	ath-m.4.str for AT1G65690	ath-u.5 for AT1G54540	bra-r.6 for 103838730	bra-r.6 for 103852291	bra-r.6 for 103868314	bna-r.1 for 106345578	bna-r.1 for 106392178	bna-r.1 for 106379446	ghi-r.1 for 107891384	cit-r.1 for 102613760	gma-u.5 for 100778798	gma-u.5 for 100781699	vvi-u.5 for 100244374	vvi-u.5 for 100249528	ppo-u.5 for 7494378	mtr-u.5 for 25484544	mtr-u.5 for 11426665	mtr-u.5 for 25489194	sly-u.5 for 101262768	sly-u.5 for 104645573	sot-r.1 for 102600044	sot-r.1 for 102578226	sot-r.1 for 107060790	nta-r.1 for 107809564	nta-r.1 for 107809495	nta-r.1 for 107799428	zma-u.5 for 100384448	zma-u.5 for 100383182	zma-u.5 for 100281231	tae-r.2 for 123050645	tae-r.2 for 123186575	tae-r.2 for 123181268	hvu-r.1 for 123431190	hvu-r.1 for 123410012	sbi-r.1 for 8076462	sbi-r.1 for 8079001	sbi-r.1 for 8067112	bdi-r.1 for 100823949	bdi-r.1 for 100846419

Ortholog

Ortholog ID: 1769

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family

NDR1/HIN1-like protein 6

LEA domain-containing protein

NDR1/HIN1-like protein 6

NDR1/HIN1-like protein

protein YLS9-like

NDR1/HIN1-like protein 6

uncharacterized LOC100384448

uncharacterized LOC100383182

NHL25

NDR1/HIN1-like protein 6

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00073	Cutin, suberine and wax biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	3
bra00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04016	MAPK signaling pathway - plant	2
ghi04070	Phosphatidylinositol signaling system	2
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	2
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	3
gma00053	Ascorbate and aldarate metabolism	2
gma00350	Tyrosine metabolism	2
gma00950	Isoquinoline alkaloid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2
gma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00062	Fatty acid elongation	3
mtr00073	Cutin, suberine and wax biosynthesis	2
mtr04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	2
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00940	Phenylpropanoid biosynthesis	2
nta00941	Flavonoid biosynthesis	2
nta00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

842880

841896

103838730

103852291

106424873

125595985

125595990

107904887

102613760

100778798

100782663

100244374

100249528

7494378

25484544

11426665

25489194

101262768

104645573

102600044

102578226

107060790

107809564

107790972

107776010

100384448

100383182

100281231

123050645

123186575

123122567

123431190

123410012

8067112

8054835

8086397

100823949

100846419

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	zma	tae	hvu	sbi	bdi	cre	osa
Paralog	10	3	3	1	1	2	2	1	3	2	3	3	3	3	2	3	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G65690 (ath-m.4.tis coexpression data)

Top 50 enrichment test to AT1G65690 (ath-m.4.tis coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**