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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-u.5   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-r.7   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-m.9   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-e.2   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-m.4.bio   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-m.4.hor   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-m.4.lig   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-m.4.str   LYM3   Peptidoglycan-binding LysM domain-containing protein 
 ath-u.5   LYM1   lysm domain GPI-anchored protein 1 precursor 
 bra-r.6   103853085   lysM domain-containing GPI-anchored protein 3 
 bra-r.6   103873027   lysM domain-containing GPI-anchored protein 1 
 bna-r.1   125594053   lysM domain-containing GPI-anchored protein 3-like 
 bna-r.1   106347391   lysM domain-containing GPI-anchored protein 1 
 bna-r.1   125577152   lysM domain-containing GPI-anchored protein 1-like 
 ghi-r.1   121229434   lysM domain-containing GPI-anchored protein 1 
 ghi-r.1   107962508   lysM domain-containing GPI-anchored protein 1 
 ghi-r.1   107922287   lysM domain-containing GPI-anchored protein 1 
 cit-r.1   102625707   lysM domain-containing GPI-anchored protein 1 
 gma-u.5   100777292   lysM domain-containing GPI-anchored protein 1 
 gma-u.5   100808966   lysM domain-containing GPI-anchored protein 1 
 vvi-u.5   100253893   lysM domain-containing GPI-anchored protein 1 
 ppo-u.5   7460946   lysM domain-containing GPI-anchored protein 1 
 ppo-u.5   7463162   lysM domain-containing GPI-anchored protein 1 
 mtr-u.5   11418012   lysM domain-containing GPI-anchored protein 1 
 sly-u.5   101245017   lysM domain-containing GPI-anchored protein 1 
 sot-r.1   102593587   lysM domain-containing GPI-anchored protein 1-like 
 nta-r.1   107770883   lysM domain-containing GPI-anchored protein 1 
 nta-r.1   107805926   lysM domain-containing GPI-anchored protein 1-like 
 osa-u.5   4330856   lysM domain-containing GPI-anchored protein LYP6-like 
 osa-u.5   4340448   lysM domain-containing GPI-anchored protein LYP6-like 
 zma-u.5   100383798   erwinia induced protein 1 
 zma-u.5   100283804   erwinia induced protein 1 
 tae-r.2   123165948   lysM domain-containing GPI-anchored protein LYP6 
 hvu-r.1   123410788   lysM domain-containing GPI-anchored protein LYP6 
 hvu-r.1   123401743   lysM domain-containing GPI-anchored protein LYP6-like 
 sbi-r.1   8070751   lysM domain-containing GPI-anchored protein 1 
 sbi-r.1   8075207   lysM domain-containing GPI-anchored protein 1 
 bdi-r.1   100826670   lysM domain-containing GPI-anchored protein LYP6 
 bdi-r.1   100830686   lysM domain-containing GPI-anchored protein LYP6 

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Top 50 coexpressed genes to LYM3 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LYM3 (ath-m.4.tis coexpression data)

CoexMap"844098"


athLYM3 | Entrez gene ID : 844098      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 1 2 1 2 1 1 1 2 2 2 1 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006955 [list] [network] immune response  (166 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA IDA  
GO:0016020 [list] [network] membrane  (3740 genes)  TAS  
GO MF
GO:0042834 [list] [network] peptidoglycan binding  (2 genes)  IDA  
Protein NP_177886.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  extr 1,  vacu 1,  golg 1  (predict for NP_177886.2)
Subcellular
localization
TargetP
scret 9  (predict for NP_177886.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
LYM3
ath-u.5
for
LYM3
ath-r.7
for
LYM3
ath-m.9
for
LYM3
ath-e.2
for
LYM3
ath-m.4.bio
for
LYM3
ath-m.4.hor
for
LYM3
ath-m.4.lig
for
LYM3
ath-m.4.str
for
LYM3
ath-u.5
for
LYM1
bra-r.6
for
103853085
bra-r.6
for
103873027
bna-r.1
for
125594053
bna-r.1
for
106347391
bna-r.1
for
125577152
ghi-r.1
for
121229434
ghi-r.1
for
107962508
ghi-r.1
for
107922287
cit-r.1
for
102625707
gma-u.5
for
100777292
gma-u.5
for
100808966
vvi-u.5
for
100253893
ppo-u.5
for
7460946
ppo-u.5
for
7463162
mtr-u.5
for
11418012
sly-u.5
for
101245017
sot-r.1
for
102593587
nta-r.1
for
107770883
nta-r.1
for
107805926
osa-u.5
for
4330856
osa-u.5
for
4340448
zma-u.5
for
100383798
zma-u.5
for
100283804
tae-r.2
for
123165948
hvu-r.1
for
123410788
hvu-r.1
for
123401743
sbi-r.1
for
8070751
sbi-r.1
for
8075207
bdi-r.1
for
100826670
bdi-r.1
for
100830686


Ortholog ID: 4314
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi
Symbol LYM3 LYM1 LOC103853085 LOC103873027 LOC106347391 LOC106397288 LOC106397702 LOC121229434 LOC107962508 LOC107922287 LOC102625707 LOC100777292 LOC100808966 LOC100253893 LOC7460946 LOC7463162 LOC11418012 LOC101245017 LOC102593587 LOC107770883 LOC107805926 LOC4330856 LOC4340448 LOC100383798 LOC100283804 LOC123149871 LOC123157352 LOC123410788 LOC123401743 LOC8070751 LOC8075207 LOC100826670 LOC100830686
Function* Peptidoglycan-binding LysM domain-containing protein lysm domain GPI-anchored protein 1 precursor lysM domain-containing GPI-anchored protein 3 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 3 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1-like lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1-like lysM domain-containing GPI-anchored protein LYP6-like lysM domain-containing GPI-anchored protein LYP6-like erwinia induced protein 1 erwinia induced protein 1 lysM domain-containing GPI-anchored protein LYP6 lysM domain-containing GPI-anchored protein LYP6 lysM domain-containing GPI-anchored protein LYP6 lysM domain-containing GPI-anchored protein LYP6-like lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein 1 lysM domain-containing GPI-anchored protein LYP6 lysM domain-containing GPI-anchored protein LYP6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03420 Nucleotide excision repair 3
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03440 Homologous recombination 2
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00310 Lysine degradation 2
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04145 Phagosome 4
vvi04517 IgSF CAM signaling 4
vvi04814 Motor proteins 4
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
ppo04141 Protein processing in endoplasmic reticulum 2
ppo00010 Glycolysis / Gluconeogenesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04517 IgSF CAM signaling 2
ppo04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00510 N-Glycan biosynthesis 2
mtr00513 Various types of N-glycan biosynthesis 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 4
zma01200 Carbon metabolism 4
zma00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 4
tae00500 Starch and sucrose metabolism 4
tae00999 Biosynthesis of various plant secondary metabolites 4
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
tae04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04145 Phagosome 2
sbi04517 IgSF CAM signaling 2
sbi04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844098 838790 103853085 103873027 106347391 106397288 106397702 121229434 107962508 107922287 102625707 100777292 100808966 100253893 7460946 7463162 11418012 101245017 102593587 107770883 107805926 4330856 4340448 100383798 100283804 123149871 123157352 123410788 123401743 8070751 8075207 100826670 100830686
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