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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   VSR4   vacuolar sorting receptor 4 
 ath-u.5   VSR4   vacuolar sorting receptor 4 
 ath-e.2   VSR4   vacuolar sorting receptor 4 
 ath-u.5   VSR1   vacuolar sorting receptor homolog 1 
 ath-u.5   VSR3   vacuolar sorting receptor 3 
 bra-r.6   103840280   vacuolar-sorting receptor 6 
 bra-r.6   103867094   vacuolar-sorting receptor 1 
 bra-r.6   103865366   vacuolar-sorting receptor 5 
 bna-r.1   111203611   vacuolar-sorting receptor 1-like 
 bna-r.1   106367929   vacuolar-sorting receptor 1 
 bna-r.1   106349187   vacuolar-sorting receptor 6 
 ghi-r.1   107934139   vacuolar-sorting receptor 3 
 ghi-r.1   107927544   vacuolar-sorting receptor 6 
 cit-r.1   102607976   vacuolar-sorting receptor 3 
 cit-r.1   102611540   vacuolar-sorting receptor 6-like 
 cit-r.1   102629481   vacuolar-sorting receptor 1-like 
 gma-u.5   100807514   vacuolar-sorting receptor 1 
 gma-u.5   100807869   vacuolar-sorting receptor 1 
 vvi-u.5   100265315   vacuolar-sorting receptor 1 
 vvi-u.5   100265163   vacuolar-sorting receptor 3 
 vvi-u.5   100252664   vacuolar-sorting receptor 6 
 ppo-u.5   7478654   vacuolar-sorting receptor 3 
 ppo-u.5   7478736   vacuolar-sorting receptor 3 
 ppo-u.5   18106360   vacuolar-sorting receptor 1 
 mtr-u.5   11412722   vacuolar-sorting receptor 1 
 mtr-u.5   25488210   vacuolar-sorting receptor 6 
 mtr-u.5   11427260   vacuolar-sorting receptor 1 
 sly-u.5   101261176   vacuolar-sorting receptor 1-like 
 sly-u.5   101260562   vacuolar-sorting receptor 1-like 
 sly-u.5   101266168   vacuolar-sorting receptor 3 
 sot-r.1   102577855   vacuolar sorting receptor protein PV72-like protein 
 sot-r.1   102591192   vacuolar-sorting receptor 6-like 
 sot-r.1   102586925   vacuolar-sorting receptor 3 
 nta-r.1   107829052   vacuolar-sorting receptor 1-like 
 nta-r.1   107826752   vacuolar-sorting receptor 6 
 nta-r.1   107805391   vacuolar-sorting receptor 6 
 osa-u.5   9269169   vacuolar-sorting receptor 1 
 osa-u.5   4341771   vacuolar-sorting receptor 6 
 osa-u.5   4348376   vacuolar-sorting receptor 3 
 zma-u.5   100191845   uncharacterized LOC100191845 
 zma-u.5   100383090   Vacuolar-sorting receptor 1 
 zma-u.5   100286125   vacuolar sorting receptor 7 
 tae-r.2   123103160   vacuolar-sorting receptor 1 
 tae-r.2   123043163   vacuolar-sorting receptor 1 
 tae-r.2   123051550   vacuolar-sorting receptor 1 
 hvu-r.1   123448070   vacuolar-sorting receptor 1-like 
 hvu-r.1   123398006   vacuolar-sorting receptor 1-like 
 hvu-r.1   123400208   vacuolar-sorting receptor 1-like 
 sbi-r.1   8082338   vacuolar-sorting receptor 1 
 sbi-r.1   8074452   vacuolar-sorting receptor 1 
 sbi-r.1   8069390   vacuolar-sorting receptor 6 
 bdi-r.1   100827132   vacuolar-sorting receptor 7 
 bdi-r.1   100827220   vacuolar-sorting receptor 1 
 cre-r.1   CHLRE_02g095111v5   uncharacterized protein 

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Top 50 coexpressed genes to VSR4 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VSR4 (ath-r.7 coexpression data)

CoexMap"815960"


athVSR4 | Entrez gene ID : 815960      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 5 3 3 2 3 2 3 3 3 3 3 3 3 3 3 3 3 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006623 [list] [network] protein targeting to vacuole  (31 genes)  IGI TAS  
GO CC
GO:0017119 [list] [network] Golgi transport complex  (10 genes)  IPI  
GO:0005802 [list] [network] trans-Golgi network  (279 genes)  HDA TAS  
GO:0005768 [list] [network] endosome  (359 genes)  HDA  
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO MF
GO:0005509 [list] [network] calcium ion binding  (158 genes)  IEA  
Protein NP_179079.1 [sequence] [blastp]
NP_849954.1 [sequence] [blastp]
Subcellular
localization
wolf
vacu 4,  golg 2,  extr 1,  golg_plas 1  (predict for NP_179079.1)
vacu 4,  golg 2,  extr 1,  golg_plas 1  (predict for NP_849954.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_179079.1)
scret 9  (predict for NP_849954.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
VSR4
ath-u.5
for
VSR4
ath-e.2
for
VSR4
ath-u.5
for
VSR1
ath-u.5
for
VSR3
bra-r.6
for
103840280
bra-r.6
for
103867094
bra-r.6
for
103865366
bna-r.1
for
111203611
bna-r.1
for
106367929
bna-r.1
for
106349187
ghi-r.1
for
107934139
ghi-r.1
for
107927544
cit-r.1
for
102607976
cit-r.1
for
102611540
cit-r.1
for
102629481
gma-u.5
for
100807514
gma-u.5
for
100807869
vvi-u.5
for
100265315
vvi-u.5
for
100265163
vvi-u.5
for
100252664
ppo-u.5
for
7478654
ppo-u.5
for
7478736
ppo-u.5
for
18106360
mtr-u.5
for
11412722
mtr-u.5
for
25488210
mtr-u.5
for
11427260
sly-u.5
for
101261176
sly-u.5
for
101260562
sly-u.5
for
101266168
sot-r.1
for
102577855
sot-r.1
for
102591192
sot-r.1
for
102586925
nta-r.1
for
107829052
nta-r.1
for
107826752
nta-r.1
for
107805391
osa-u.5
for
9269169
osa-u.5
for
4341771
osa-u.5
for
4348376
zma-u.5
for
100191845
zma-u.5
for
100383090
zma-u.5
for
100286125
tae-r.2
for
123103160
tae-r.2
for
123043163
tae-r.2
for
123051550
hvu-r.1
for
123448070
hvu-r.1
for
123398006
hvu-r.1
for
123400208
sbi-r.1
for
8082338
sbi-r.1
for
8074452
sbi-r.1
for
8069390
bdi-r.1
for
100827132
bdi-r.1
for
100827220
cre-r.1
for
CHLRE_02g095111v5


Ortholog ID: 415
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre
Symbol VSR4 VSR3 VSR6 LOC103840280 LOC103865366 LOC103850264 LOC111203611 LOC106450957 LOC106410773 LOC107910673 LOC107914526 LOC107945280 LOC102607976 LOC102611540 LOC102629481 LOC100807514 LOC100806422 LOC100803958 LOC100265315 LOC100265163 LOC100252664 LOC7478654 LOC7477785 LOC7468091 LOC25488210 LOC11437909 LOC101261176 LOC101260562 LOC101250358 LOC102577855 LOC102586925 LOC102594404 LOC107773726 LOC107759156 LOC107761706 LOC4341771 LOC4351323 LOC4336957 LOC100191845 LOC100383090 LOC100383531 LOC123187475 LOC123180817 LOC123448070 LOC123400208 LOC123413532 LOC8082338 LOC8069390 LOC8067617 LOC100827220 LOC100832568 LOC100825752 CHLRE_02g095111v5
Function* vacuolar sorting receptor 4 vacuolar sorting receptor 3 VACUOLAR SORTING RECEPTOR 6 vacuolar-sorting receptor 6 vacuolar-sorting receptor 5 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1-like vacuolar-sorting receptor 1 vacuolar-sorting receptor 3 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 6 vacuolar-sorting receptor 3 vacuolar-sorting receptor 6-like vacuolar-sorting receptor 1-like vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 3 vacuolar-sorting receptor 6 vacuolar-sorting receptor 3 vacuolar-sorting receptor 6 vacuolar-sorting receptor 1 vacuolar-sorting receptor 6 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1-like vacuolar-sorting receptor 1-like vacuolar-sorting receptor 6 vacuolar sorting receptor protein PV72-like protein vacuolar-sorting receptor 3 vacuolar-sorting receptor 1-like vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 3 vacuolar-sorting receptor 6 vacuolar-sorting receptor 1 vacuolar-sorting receptor 7 uncharacterized LOC100191845 Vacuolar-sorting receptor 1 Vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1-like vacuolar-sorting receptor 1-like vacuolar-sorting receptor 6-like vacuolar-sorting receptor 1 vacuolar-sorting receptor 6 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 vacuolar-sorting receptor 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04820 Cytoskeleton in muscle cells 2
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00071 Fatty acid degradation 2
bra00410 beta-Alanine metabolism 2
bra00592 alpha-Linolenic acid metabolism 2
bra00640 Propanoate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 2
bna01040 Biosynthesis of unsaturated fatty acids 2
bna01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna04145 Phagosome 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 11
ghi00360 Phenylalanine metabolism 9
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi00941 Flavonoid biosynthesis 2
ghi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit02010 ABC transporters 2
cit04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 6
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 15
ppo04145 Phagosome 4
ppo03060 Protein export 2
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 3
ppo01230 Biosynthesis of amino acids 3
ppo00220 Arginine biosynthesis 2
ppo00250 Alanine, aspartate and glutamate metabolism 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 6
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04016 MAPK signaling pathway - plant 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00071 Fatty acid degradation 2
mtr00592 alpha-Linolenic acid metabolism 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04141 Protein processing in endoplasmic reticulum 10
sly04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00260 Glycine, serine and threonine metabolism 4
sly00280 Valine, leucine and isoleucine degradation 3
sly00310 Lysine degradation 2
sly00250 Alanine, aspartate and glutamate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00020 Citrate cycle (TCA cycle) 4
sot01210 2-Oxocarboxylic acid metabolism 4
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 5
sot00071 Fatty acid degradation 3
sot00592 alpha-Linolenic acid metabolism 3
sot00640 Propanoate metabolism 3
sot01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 11
sot00071 Fatty acid degradation 3
sot00592 alpha-Linolenic acid metabolism 3
sot00640 Propanoate metabolism 3
sot01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00071 Fatty acid degradation 3
nta00592 alpha-Linolenic acid metabolism 3
nta01212 Fatty acid metabolism 3
nta04141 Protein processing in endoplasmic reticulum 3
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
nta01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 2
osa04075 Plant hormone signal transduction 2
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 4
zma04145 Phagosome 4
zma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04626 Plant-pathogen interaction 2
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 4
tae00620 Pyruvate metabolism 4
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00250 Alanine, aspartate and glutamate metabolism 3
hvu01240 Biosynthesis of cofactors 2
hvu00220 Arginine biosynthesis 2
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi04145 Phagosome 2
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 4
sbi04145 Phagosome 4
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi01230 Biosynthesis of amino acids 2
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00071 Fatty acid degradation 4
bdi01212 Fatty acid metabolism 4
bdi00592 alpha-Linolenic acid metabolism 3
bdi04146 Peroxisome 2
bdi01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 815960 815962 839974 103840280 103865366 103850264 111203611 106450957 106410773 107910673 107914526 107945280 102607976 102611540 102629481 100807514 100806422 100803958 100265315 100265163 100252664 7478654 7477785 7468091 25488210 11437909 101261176 101260562 101250358 102577855 102586925 102594404 107773726 107759156 107761706 4341771 4351323 4336957 100191845 100383090 100383531 123187475 123180817 123448070 123400208 123413532 8082338 8069390 8067617 100827220 100832568 100825752 5726733
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