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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT2G24060   Translation initiation factor 3 protein 
 ath-u.5   AT2G24060   Translation initiation factor 3 protein 
 ath-m.9   AT2G24060   Translation initiation factor 3 protein 
 ath-e.2   AT2G24060   Translation initiation factor 3 protein 
 ath-m.4.bio   AT2G24060   Translation initiation factor 3 protein 
 ath-m.4.hor   AT2G24060   Translation initiation factor 3 protein 
 ath-m.4.lig   AT2G24060   Translation initiation factor 3 protein 
 ath-m.4.str   AT2G24060   Translation initiation factor 3 protein 
 ath-m.4.tis   AT2G24060   Translation initiation factor 3 protein 
 ath-u.5   AT4G30690   Translation initiation factor 3 protein 
 bra-r.6   103861997   translation initiation factor IF3-4, chloroplastic 
 bra-r.6   103864516   translation initiation factor IF3-2, chloroplastic 
 bna-r.1   106446626   translation initiation factor IF3-2, chloroplastic 
 bna-r.1   106446539   translation initiation factor IF3-2, chloroplastic 
 bna-r.1   106441106   translation initiation factor IF3-4, chloroplastic 
 ghi-r.1   107953680   translation initiation factor IF3-4, chloroplastic 
 ghi-r.1   107933148   translation initiation factor IF3-4, chloroplastic 
 cit-r.1   102615703   translation initiation factor IF3-4, chloroplastic 
 gma-u.5   100791411   translation initiation factor IF3-4, chloroplastic 
 gma-u.5   100780734   translation initiation factor IF-3-like 
 vvi-u.5   100243384   translation initiation factor IF3-4, chloroplastic 
 ppo-u.5   7493383   translation initiation factor IF3-2, chloroplastic 
 mtr-u.5   11438624   translation initiation factor IF3-4, chloroplastic 
 sly-u.5   101248589   translation initiation factor IF3-4, chloroplastic 
 sot-r.1   102579062   translation initiation factor IF-3 
 nta-r.1   107806630   translation initiation factor IF3-2, chloroplastic-like 
 nta-r.1   107769135   translation initiation factor IF3-4, chloroplastic-like 
 osa-u.5   4330995   translation initiation factor IF3-4, chloroplastic 
 zma-u.5   100193325   embryo defective12 
 tae-r.2   123128749   translation initiation factor IF3-4, chloroplastic 
 tae-r.2   123139069   translation initiation factor IF3-4, chloroplastic 
 tae-r.2   123145886   translation initiation factor IF3-4, chloroplastic 
 hvu-r.1   123403468   translation initiation factor IF3-4, chloroplastic-like 
 sbi-r.1   8082736   translation initiation factor IF3-4, chloroplastic 
 bdi-r.1   100826551   translation initiation factor IF3-4, chloroplastic 
 cre-r.1   CHLRE_01g001550v5   uncharacterized protein 

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Top 50 coexpressed genes to AT2G24060 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G24060 (ath-r.7 coexpression data)

CoexMap"816940"


athAT2G24060 | Entrez gene ID : 816940      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009658 [list] [network] chloroplast organization  (197 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO CC
GO:0005773 [list] [network] vacuole  (984 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO MF
GO:0003743 [list] [network] translation initiation factor activity  (37 genes)  IMP  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_179984.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto_nucl 2,  extr 1,  mito 1,  vacu 1  (predict for NP_179984.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_179984.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT2G24060
ath-u.5
for
AT2G24060
ath-m.9
for
AT2G24060
ath-e.2
for
AT2G24060
ath-m.4.bio
for
AT2G24060
ath-m.4.hor
for
AT2G24060
ath-m.4.lig
for
AT2G24060
ath-m.4.str
for
AT2G24060
ath-m.4.tis
for
AT2G24060
ath-u.5
for
AT4G30690
bra-r.6
for
103861997
bra-r.6
for
103864516
bna-r.1
for
106446626
bna-r.1
for
106446539
bna-r.1
for
106441106
ghi-r.1
for
107953680
ghi-r.1
for
107933148
cit-r.1
for
102615703
gma-u.5
for
100791411
gma-u.5
for
100780734
vvi-u.5
for
100243384
ppo-u.5
for
7493383
mtr-u.5
for
11438624
sly-u.5
for
101248589
sot-r.1
for
102579062
nta-r.1
for
107806630
nta-r.1
for
107769135
osa-u.5
for
4330995
zma-u.5
for
100193325
tae-r.2
for
123128749
tae-r.2
for
123139069
tae-r.2
for
123145886
hvu-r.1
for
123403468
sbi-r.1
for
8082736
bdi-r.1
for
100826551
cre-r.1
for
CHLRE_01g001550v5


Ortholog ID: 6812
Species ath ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT2G24060 AT4G30690 LOC103861997 LOC103864516 LOC106446626 LOC106441106 LOC106411023 LOC107953680 LOC107933148 LOC102615703 LOC100791411 LOC100499836 LOC100243384 LOC7493383 LOC11438624 LOC101248589 LOC102579062 LOC107806630 LOC107769135 LOC4330995 LOC100193325 LOC123128749 LOC123139069 LOC123145886 LOC123403468 LOC8082736 LOC100826551 CHLRE_01g001550v5
Function* Translation initiation factor 3 protein Translation initiation factor 3 protein translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-2, chloroplastic translation initiation factor IF3-2, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic-like translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic uncharacterized LOC100499836 translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-2, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF-3 translation initiation factor IF3-2, chloroplastic-like translation initiation factor IF3-4, chloroplastic-like translation initiation factor IF3-4, chloroplastic embryo defective12 translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic-like translation initiation factor IF3-4, chloroplastic translation initiation factor IF3-4, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 3
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
sbi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 5
cre00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
cre01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816940 829192 103861997 103864516 106446626 106441106 106411023 107953680 107933148 102615703 100791411 100499836 100243384 7493383 11438624 101248589 102579062 107806630 107769135 4330995 100193325 123128749 123139069 123145886 123403468 8082736 100826551 5725917
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