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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-u.5   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.9   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-e.2   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.bio   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.hor   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.lig   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.str   ELF3   hydroxyproline-rich glycoprotein family protein 
 ath-m.4.tis   ELF3   hydroxyproline-rich glycoprotein family protein 
 bra-r.6   103249168   protein EARLY FLOWERING 3 
 bra-r.6   103864705   protein EARLY FLOWERING 3 
 bna-r.1   106401206   protein EARLY FLOWERING 3 
 bna-r.1   106401205   protein EARLY FLOWERING 3-like 
 bna-r.1   106368547   protein EARLY FLOWERING 3 
 ghi-r.1   107929929   protein EARLY FLOWERING 3 
 ghi-r.1   107906126   protein HEADING DATE 3B 
 ghi-r.1   107891717   protein HEADING DATE 3B 
 cit-r.1   102622101   ELF3-like protein 2 
 cit-r.1   102615318   protein EARLY FLOWERING 3 
 gma-u.5   ELF3A   protein EARLY FLOWERING 3a 
 gma-u.5   ELF3B   protein EARLY FLOWERING 3b 
 gma-u.5   100820110   ELF3-like protein 2 
 vvi-u.5   100255961   protein EARLY FLOWERING 3 
 vvi-u.5   100256592   protein EARLY FLOWERING 3 
 ppo-u.5   7478180   protein HEADING DATE 3B 
 ppo-u.5   7470724   protein EARLY FLOWERING 3 
 mtr-u.5   11431402   protein EARLY FLOWERING 3 
 mtr-u.5   25482012   ELF3-like protein 2 
 mtr-u.5   25500383   protein HEADING DATE 3B 
 sly-u.5   101265040   ELF3-like protein 2 
 sly-u.5   101267430   protein EARLY FLOWERING 3 
 sly-u.5   101268174   protein EARLY FLOWERING 3 
 sot-r.1   102597046   protein EARLY FLOWERING 3 
 sot-r.1   102586641   protein EARLY FLOWERING 3-like 
 sot-r.1   102601288   protein EARLY FLOWERING 3-like 
 nta-r.1   107789414   ELF3-like protein 2 
 nta-r.1   107766207   ELF3-like protein 2 
 nta-r.1   107832158   ELF3-like protein 2 
 osa-u.5   4327931   ELF3-like protein 2 
 osa-u.5   4340087   protein HEADING DATE 3B-like 
 zma-u.5   100383534   uncharacterized LOC100383534 
 zma-u.5   103630791   ELF3-like protein 2 
 tae-r.2   123071043   ELF3-like protein 2 
 tae-r.2   100127071   ELF3-like protein 2 
 tae-r.2   123183422   ELF3-like protein 2 
 hvu-r.1   123452745   ELF3-like protein 2 
 sbi-r.1   8078190   ELF3-like protein 2 
 sbi-r.1   8065332   ELF3-like protein 2 
 bdi-r.1   100838991   ELF3-like protein 2 

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Top 50 coexpressed genes to ELF3 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to ELF3 (ath-r.7 coexpression data)

CoexMap"817134"


athELF3 | Entrez gene ID : 817134      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 2 3 2 2 3 3 3 3 2 2 3 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04712 [list] [network] Circadian rhythm - plant (43 genes)
GO BP
GO:0010031 [list] [network] circumnutation  (6 genes)  IMP  
GO:0009649 [list] [network] entrainment of circadian clock  (12 genes)  IMP  
GO:0009585 [list] [network] red, far-red light phototransduction  (20 genes)  IMP  
GO:0048573 [list] [network] photoperiodism, flowering  (77 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (101 genes)  IEA  
GO:0010119 [list] [network] regulation of stomatal movement  (113 genes)  IMP  
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO:0009826 [list] [network] unidimensional cell growth  (310 genes)  IMP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_180164.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_180164.1)
Subcellular
localization
TargetP
other 8  (predict for NP_180164.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
ELF3
ath-u.5
for
ELF3
ath-m.9
for
ELF3
ath-e.2
for
ELF3
ath-m.4.bio
for
ELF3
ath-m.4.hor
for
ELF3
ath-m.4.lig
for
ELF3
ath-m.4.str
for
ELF3
ath-m.4.tis
for
ELF3
bra-r.6
for
103249168
bra-r.6
for
103864705
bna-r.1
for
106401206
bna-r.1
for
106401205
bna-r.1
for
106368547
ghi-r.1
for
107929929
ghi-r.1
for
107906126
ghi-r.1
for
107891717
cit-r.1
for
102622101
cit-r.1
for
102615318
gma-u.5
for
ELF3A
gma-u.5
for
ELF3B
gma-u.5
for
100820110
vvi-u.5
for
100255961
vvi-u.5
for
100256592
ppo-u.5
for
7478180
ppo-u.5
for
7470724
mtr-u.5
for
11431402
mtr-u.5
for
25482012
mtr-u.5
for
25500383
sly-u.5
for
101265040
sly-u.5
for
101267430
sly-u.5
for
101268174
sot-r.1
for
102597046
sot-r.1
for
102586641
sot-r.1
for
102601288
nta-r.1
for
107789414
nta-r.1
for
107766207
nta-r.1
for
107832158
osa-u.5
for
4327931
osa-u.5
for
4340087
zma-u.5
for
100383534
zma-u.5
for
103630791
tae-r.2
for
123071043
tae-r.2
for
100127071
tae-r.2
for
123183422
hvu-r.1
for
123452745
sbi-r.1
for
8078190
sbi-r.1
for
8065332
bdi-r.1
for
100838991


Ortholog ID: 2617
Species ath bra bra bna bna bna ghi ghi cit cit gma gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma tae tae tae hvu sbi sbi bdi
Symbol ELF3 LOC103249168 LOC103864705 LOC106401205 LOC106368547 LOC106413679 LOC107929929 LOC107891717 LOC102622101 LOC102615318 ELF3B LOC100820110 LOC100788038 LOC100255961 LOC100256592 LOC7478180 LOC7470724 LOC11431402 LOC25482012 LOC25500383 LOC101265040 LOC101268174 LOC101245619 LOC102597046 LOC102586641 LOC102601288 LOC107789414 LOC107832158 LOC107811695 LOC4327931 LOC4340087 LOC100383534 LOC103630791 LOC123071043 LOC100127071 LOC123183422 LOC123452745 LOC8078190 LOC8065332 LOC100838991
Function* hydroxyproline-rich glycoprotein family protein protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3-like protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 protein HEADING DATE 3B ELF3-like protein 2 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3b ELF3-like protein 2 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 protein HEADING DATE 3B protein EARLY FLOWERING 3 protein EARLY FLOWERING 3 ELF3-like protein 2 protein HEADING DATE 3B ELF3-like protein 2 protein EARLY FLOWERING 3 protein EARLY FLOWERING 3-like protein EARLY FLOWERING 3 protein EARLY FLOWERING 3-like protein EARLY FLOWERING 3-like ELF3-like protein 2 ELF3-like protein 2 protein HEADING DATE 3B ELF3-like protein 2 protein HEADING DATE 3B-like uncharacterized LOC100383534 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2 ELF3-like protein 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 2
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 6
cit04016 MAPK signaling pathway - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 6
gma04016 MAPK signaling pathway - plant 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
sot04075 Plant hormone signal transduction 2
sot00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
nta00480 Glutathione metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 2
nta04075 Plant hormone signal transduction 2
nta03010 Ribosome 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04712 Circadian rhythm - plant 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817134 103249168 103864705 106401205 106368547 106413679 107929929 107891717 102622101 102615318 100818279 100820110 100788038 100255961 100256592 7478180 7470724 11431402 25482012 25500383 101265040 101268174 101245619 102597046 102586641 102601288 107789414 107832158 107811695 4327931 4340087 100383534 103630791 123071043 100127071 123183422 123452745 8078190 8065332 100838991
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