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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   CRR6   chlororespiratory reduction 6 
 ath-u.5   CRR6   chlororespiratory reduction 6 
 ath-m.9   CRR6   chlororespiratory reduction 6 
 ath-e.2   CRR6   chlororespiratory reduction 6 
 ath-m.4.bio   CRR6   chlororespiratory reduction 6 
 ath-m.4.hor   CRR6   chlororespiratory reduction 6 
 ath-m.4.lig   CRR6   chlororespiratory reduction 6 
 ath-m.4.str   CRR6   chlororespiratory reduction 6 
 ath-m.4.tis   CRR6   chlororespiratory reduction 6 
 bra-r.6   103843223   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 bna-r.1   125578007   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic-like 
 bna-r.1   106436161   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 bna-r.1   106392312   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 ghi-r.1   107958698   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 ghi-r.1   107907320   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 cit-r.1   102614430   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 gma-u.5   100810072   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 gma-u.5   100526934   uncharacterized LOC100526934 
 vvi-u.5   100255118   uncharacterized LOC100255118 
 ppo-u.5   18099882   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 mtr-u.5   11438187   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 sly-u.5   101254005   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 sot-r.1   102595808   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 nta-r.1   107812516   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 nta-r.1   107766098   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic-like 
 osa-u.5   4344752   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 zma-u.5   100274094   uncharacterized LOC100274094 
 tae-r.2   123143236   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 tae-r.2   123133405   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 tae-r.2   123131785   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 hvu-r.1   123401785   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 sbi-r.1   8060231   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 
 bdi-r.1   100826985   protein CHLORORESPIRATORY REDUCTION 6, chloroplastic 

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Top 50 coexpressed genes to CRR6 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CRR6 (ath-r.7 coexpression data)

CoexMap"819403"


athCRR6 | Entrez gene ID : 819403      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010275 [list] [network] NAD(P)H dehydrogenase complex assembly  (11 genes)  IMP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_566113.1 [sequence] [blastp]
NP_973713.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 2,  chlo_mito 2,  extr 1,  vacu 1,  cyto_plas 1  (predict for NP_566113.1)
nucl 4,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_973713.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_566113.1)
other 6  (predict for NP_973713.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
CRR6
ath-u.5
for
CRR6
ath-m.9
for
CRR6
ath-e.2
for
CRR6
ath-m.4.bio
for
CRR6
ath-m.4.hor
for
CRR6
ath-m.4.lig
for
CRR6
ath-m.4.str
for
CRR6
ath-m.4.tis
for
CRR6
bra-r.6
for
103843223
bna-r.1
for
125578007
bna-r.1
for
106436161
bna-r.1
for
106392312
ghi-r.1
for
107958698
ghi-r.1
for
107907320
cit-r.1
for
102614430
gma-u.5
for
100810072
gma-u.5
for
100526934
vvi-u.5
for
100255118
ppo-u.5
for
18099882
mtr-u.5
for
11438187
sly-u.5
for
101254005
sot-r.1
for
102595808
nta-r.1
for
107812516
nta-r.1
for
107766098
osa-u.5
for
4344752
zma-u.5
for
100274094
tae-r.2
for
123143236
tae-r.2
for
123133405
tae-r.2
for
123131785
hvu-r.1
for
123401785
sbi-r.1
for
8060231
bdi-r.1
for
100826985


Ortholog ID: 10058
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol CRR6 LOC103843223 LOC125578007 LOC106436161 LOC106392312 LOC107958698 LOC107907320 LOC102614430 LOC100810072 LOC100526934 LOC100255118 LOC18099882 LOC11438187 LOC101254005 LOC102595808 LOC107812516 LOC107766098 LOC4344752 LOC100274094 LOC123143236 LOC123133405 LOC123131785 LOC123401785 LOC8060231 LOC100826985
Function* chlororespiratory reduction 6 protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic-like protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic uncharacterized LOC100526934 uncharacterized LOC100255118 protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic-like protein CHLORORESPIRATORY REDUCTION 6, chloroplastic uncharacterized LOC100274094 protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic protein CHLORORESPIRATORY REDUCTION 6, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 6
bna00710 Carbon fixation by Calvin cycle 6
bna01200 Carbon metabolism 6
bna01230 Biosynthesis of amino acids 6
bna00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00860 Porphyrin metabolism 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae00030 Pentose phosphate pathway 2
tae01230 Biosynthesis of amino acids 2
tae00460 Cyanoamino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819403 103843223 125578007 106436161 106392312 107958698 107907320 102614430 100810072 100526934 100255118 18099882 11438187 101254005 102595808 107812516 107766098 4344752 100274094 123143236 123133405 123131785 123401785 8060231 100826985
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