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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   EMB2016   embryo defective 2016 
 ath-u.5   EMB2016   embryo defective 2016 
 ath-e.2   EMB2016   embryo defective 2016 
 bra-r.6   103859111   protein virilizer homolog 
 bna-r.1   106439113   protein virilizer homolog 
 bna-r.1   106388860   protein virilizer homolog 
 ghi-r.1   107948598   protein virilizer homolog 
 ghi-r.1   107899405   protein virilizer homolog 
 cit-r.1   102628062   protein virilizer homolog 
 gma-u.5   100787719   protein virilizer homolog 
 gma-u.5   100793152   protein virilizer homolog 
 vvi-u.5   100246722   protein virilizer homolog 
 ppo-u.5   7488085   protein virilizer homolog 
 mtr-u.5   25483684   protein virilizer homolog 
 sly-u.5   101258924   protein virilizer homolog 
 sot-r.1   102581205   uncharacterized LOC102581205 
 nta-r.1   107803234   protein virilizer homolog 
 nta-r.1   107829690   protein virilizer homolog 
 nta-r.1   142161693   protein virilizer homolog 
 osa-u.5   107277724   protein virilizer homolog 
 zma-u.5   100274006   uncharacterized LOC100274006 
 tae-r.2   123156728   protein virilizer homolog 
 tae-r.2   123147804   protein virilizer homolog 
 tae-r.2   123164557   protein virilizer homolog 
 hvu-r.1   123409233   protein virilizer homolog 
 sbi-r.1   8065147   uncharacterized LOC8065147 
 bdi-r.1   100827734   uncharacterized LOC100827734 

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Top 50 coexpressed genes to EMB2016 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMB2016 (ath-r.7 coexpression data)

CoexMap"819736"


athEMB2016 | Entrez gene ID : 819736      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 2 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010117 [list] [network] photoprotection  (14 genes)  IMP  
GO:0001510 [list] [network] RNA methylation  (40 genes)  IMP  
GO:0006397 [list] [network] mRNA processing  (185 genes)  IMP  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP NAS  
GO CC
GO:0036396 [list] [network] RNA N6-methyladenosine methyltransferase complex  (5 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0008174 [list] [network] mRNA methyltransferase activity  (3 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319481.1 [sequence] [blastp]
NP_187219.5 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  plas 2,  chlo 1,  cyto 1,  cysk 1  (predict for NP_001319481.1)
nucl 6,  plas 2,  chlo 1,  cyto 1,  cysk 1  (predict for NP_187219.5)
Subcellular
localization
TargetP
other 5  (predict for NP_001319481.1)
other 5  (predict for NP_187219.5)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
EMB2016
ath-u.5
for
EMB2016
ath-e.2
for
EMB2016
bra-r.6
for
103859111
bna-r.1
for
106439113
bna-r.1
for
106388860
ghi-r.1
for
107948598
ghi-r.1
for
107899405
cit-r.1
for
102628062
gma-u.5
for
100787719
gma-u.5
for
100793152
vvi-u.5
for
100246722
ppo-u.5
for
7488085
mtr-u.5
for
25483684
sly-u.5
for
101258924
sot-r.1
for
102581205
nta-r.1
for
107803234
nta-r.1
for
107829690
nta-r.1
for
142161693
osa-u.5
for
107277724
zma-u.5
for
100274006
tae-r.2
for
123156728
tae-r.2
for
123147804
tae-r.2
for
123164557
hvu-r.1
for
123409233
sbi-r.1
for
8065147
bdi-r.1
for
100827734


Ortholog ID: 10066
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol EMB2016 LOC103859111 LOC106439113 LOC106388860 LOC107948598 LOC107899405 LOC102628062 LOC100787719 LOC100793152 LOC100246722 LOC7488085 LOC25483684 LOC101258924 LOC102581205 LOC107803234 LOC107829690 LOC142161693 LOC107277724 LOC100274006 LOC123156728 LOC123147804 LOC123164557 LOC123409233 LOC8065147 LOC100827734
Function* embryo defective 2016 protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog uncharacterized LOC102581205 protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog uncharacterized LOC100274006 protein virilizer homolog protein virilizer homolog protein virilizer homolog protein virilizer homolog uncharacterized LOC8065147 uncharacterized LOC100827734
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
bra03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03018 RNA degradation 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819736 103859111 106439113 106388860 107948598 107899405 102628062 100787719 100793152 100246722 7488085 25483684 101258924 102581205 107803234 107829690 142161693 107277724 100274006 123156728 123147804 123164557 123409233 8065147 100827734
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