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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   GYRA   DNA GYRASE A 
 ath-u.5   GYRA   DNA GYRASE A 
 ath-m.9   GYRA   DNA GYRASE A 
 ath-e.2   GYRA   DNA GYRASE A 
 ath-m.4.bio   GYRA   DNA GYRASE A 
 ath-m.4.hor   GYRA   DNA GYRASE A 
 ath-m.4.lig   GYRA   DNA GYRASE A 
 ath-m.4.str   GYRA   DNA GYRASE A 
 ath-m.4.tis   GYRA   DNA GYRASE A 
 bra-r.6   103859359   DNA gyrase subunit A, chloroplastic/mitochondrial 
 bna-r.1   106353026   DNA gyrase subunit A, chloroplastic/mitochondrial-like 
 bna-r.1   106389076   DNA gyrase subunit A, chloroplastic/mitochondrial 
 ghi-r.1   107927581   DNA gyrase subunit A, chloroplastic/mitochondrial 
 ghi-r.1   121229699   DNA gyrase subunit A, chloroplastic/mitochondrial 
 cit-r.1   102623274   DNA gyrase subunit A, chloroplastic/mitochondrial 
 gma-u.5   100791541   DNA gyrase subunit A, chloroplastic/mitochondrial 
 vvi-u.5   100250492   DNA gyrase subunit A, chloroplastic/mitochondrial 
 ppo-u.5   7491584   DNA gyrase subunit A, chloroplastic/mitochondrial 
 mtr-u.5   11429265   DNA gyrase subunit A, chloroplastic/mitochondrial 
 sly-u.5   101251225   DNA gyrase subunit A, chloroplastic/mitochondrial 
 sot-r.1   102598827   DNA gyrase subunit A, chloroplastic/mitochondrial 
 nta-r.1   107779491   DNA gyrase subunit A, chloroplastic/mitochondrial 
 nta-r.1   107807875   DNA gyrase subunit A, chloroplastic/mitochondrial-like 
 osa-u.5   4334546   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 zma-u.5   103625778   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 tae-r.2   123123417   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 tae-r.2   123113911   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 tae-r.2   123105600   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 hvu-r.1   123452945   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 sbi-r.1   8057393   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 bdi-r.1   100842594   probable DNA gyrase subunit A, chloroplastic/mitochondrial 
 cre-r.1   CHLRE_04g221650v5   uncharacterized protein 

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Top 50 coexpressed genes to GYRA (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GYRA (ath-r.7 coexpression data)

CoexMap"820238"


athGYRA | Entrez gene ID : 820238      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0016592 [list] [network] mediator complex  (45 genes)  IDA  
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0034335 [list] [network] DNA negative supercoiling activity  (3 genes)  IDA  
GO:0003916 [list] [network] DNA topoisomerase activity  (14 genes)  IGI  
Protein NP_187680.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_187680.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_187680.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
GYRA
ath-u.5
for
GYRA
ath-m.9
for
GYRA
ath-e.2
for
GYRA
ath-m.4.bio
for
GYRA
ath-m.4.hor
for
GYRA
ath-m.4.lig
for
GYRA
ath-m.4.str
for
GYRA
ath-m.4.tis
for
GYRA
bra-r.6
for
103859359
bna-r.1
for
106353026
bna-r.1
for
106389076
ghi-r.1
for
107927581
ghi-r.1
for
121229699
cit-r.1
for
102623274
gma-u.5
for
100791541
vvi-u.5
for
100250492
ppo-u.5
for
7491584
mtr-u.5
for
11429265
sly-u.5
for
101251225
sot-r.1
for
102598827
nta-r.1
for
107779491
nta-r.1
for
107807875
osa-u.5
for
4334546
zma-u.5
for
103625778
tae-r.2
for
123123417
tae-r.2
for
123113911
tae-r.2
for
123105600
hvu-r.1
for
123452945
sbi-r.1
for
8057393
bdi-r.1
for
100842594
cre-r.1
for
CHLRE_04g221650v5


Ortholog ID: 10753
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol GYRA LOC103859359 LOC106353026 LOC106389076 LOC107927581 LOC121229699 LOC102623274 LOC100791541 LOC100250492 LOC7491584 LOC11429265 LOC101251225 LOC102598827 LOC107779491 LOC107807875 LOC4334546 LOC103625778 LOC123123417 LOC123113911 LOC123105600 LOC123452945 LOC8057393 LOC100842594 CHLRE_04g221650v5
Function* DNA GYRASE A DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial-like DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial DNA gyrase subunit A, chloroplastic/mitochondrial-like probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial probable DNA gyrase subunit A, chloroplastic/mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 4
vvi03015 mRNA surveillance pathway 3
vvi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01232 Nucleotide metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00230 Purine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01232 Nucleotide metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 2
zma04146 Peroxisome 2
zma00061 Fatty acid biosynthesis 2
zma01212 Fatty acid metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 4
tae00290 Valine, leucine and isoleucine biosynthesis 3
tae00770 Pantothenate and CoA biosynthesis 3
tae01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820238 103859359 106353026 106389076 107927581 121229699 102623274 100791541 100250492 7491584 11429265 101251225 102598827 107779491 107807875 4334546 103625778 123123417 123113911 123105600 123452945 8057393 100842594 5717863
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