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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-u.5   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.9   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-e.2   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.4.bio   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.4.hor   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.4.lig   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.4.str   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 ath-m.4.tis   AT3G12260   LYR family of Fe/S cluster biogenesis protein 
 bra-r.6   103870262   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 bra-r.6   103859436   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 bra-r.6   103845648   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 bna-r.1   111214134   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like 
 bna-r.1   106452398   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 bna-r.1   106435411   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like 
 ghi-r.1   121215538   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 ghi-r.1   107915169   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 ghi-r.1   107896380   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 cit-r.1   102608946   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 gma-u.5   100814371   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 gma-u.5   100499925   uncharacterized LOC100499925 
 gma-u.5   100791392   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 vvi-u.5   100258272   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 ppo-u.5   18094349   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 mtr-u.5   11446007   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 sly-u.5   101251020   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 sot-r.1   102587609   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like 
 nta-r.1   107824967   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like 
 nta-r.1   107773085   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 nta-r.1   142173844   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like 
 osa-u.5   4344058   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 zma-u.5   100194239   uncharacterized LOC100194239 
 tae-r.2   123044029   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 tae-r.2   123051906   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 tae-r.2   123187788   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 hvu-r.1   123425075   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 sbi-r.1   8069571   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 bdi-r.1   100845666   NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 
 cre-r.1   CHLRE_12g555250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G12260 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G12260 (ath-r.7 coexpression data)

CoexMap"820406"


athAT3G12260 | Entrez gene ID : 820406    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 1 3 1 1 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00190 [list] [network] Oxidative phosphorylation (170 genes)
GO BP
GO CC
GO:0045271 [list] [network] respiratory chain complex I  (58 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  HDA IDA ISM  
GO MF
Protein NP_566416.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  cyto 4,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for NP_566416.1)
Subcellular
localization
TargetP
mito 3  (predict for NP_566416.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT3G12260
ath-u.5
for
AT3G12260
ath-m.9
for
AT3G12260
ath-e.2
for
AT3G12260
ath-m.4.bio
for
AT3G12260
ath-m.4.hor
for
AT3G12260
ath-m.4.lig
for
AT3G12260
ath-m.4.str
for
AT3G12260
ath-m.4.tis
for
AT3G12260
bra-r.6
for
103870262
bra-r.6
for
103859436
bra-r.6
for
103845648
bna-r.1
for
111214134
bna-r.1
for
106452398
bna-r.1
for
106435411
ghi-r.1
for
121215538
ghi-r.1
for
107915169
ghi-r.1
for
107896380
cit-r.1
for
102608946
gma-u.5
for
100814371
gma-u.5
for
100499925
gma-u.5
for
100791392
vvi-u.5
for
100258272
ppo-u.5
for
18094349
mtr-u.5
for
11446007
sly-u.5
for
101251020
sot-r.1
for
102587609
nta-r.1
for
107824967
nta-r.1
for
107773085
nta-r.1
for
142173844
osa-u.5
for
4344058
zma-u.5
for
100194239
tae-r.2
for
123044029
tae-r.2
for
123051906
tae-r.2
for
123187788
hvu-r.1
for
123425075
sbi-r.1
for
8069571
bdi-r.1
for
100845666
cre-r.1
for
CHLRE_12g555250v5


Ortholog ID: 6262
Species ath bra bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G12260 LOC103870262 LOC103859436 LOC103845648 LOC111214134 LOC106435411 LOC106418555 LOC121215538 LOC107915169 LOC107896380 LOC102608946 LOC100814371 LOC100499925 LOC100791392 LOC100258272 LOC18094349 LOC11446007 LOC101251020 LOC102587609 LOC107824967 LOC107773085 LOC142173844 LOC4344058 LOC100194239 LOC123044029 LOC123051906 LOC123187788 LOC123425075 LOC8069571 LOC100845666 CHLRE_12g555250v5
Function* LYR family of Fe/S cluster biogenesis protein NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 uncharacterized LOC100499925 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6-like NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 uncharacterized LOC100194239 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04146 Peroxisome 6
ghi00190 Oxidative phosphorylation 5
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 7
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 7
ghi04146 Peroxisome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 7
cit03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 9
gma01200 Carbon metabolism 8
gma00020 Citrate cycle (TCA cycle) 7
gma01230 Biosynthesis of amino acids 3
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 9
gma00020 Citrate cycle (TCA cycle) 7
gma01200 Carbon metabolism 7
gma00053 Ascorbate and aldarate metabolism 4
gma00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 14
gma00020 Citrate cycle (TCA cycle) 6
gma01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 10
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 12
nta00061 Fatty acid biosynthesis 2
nta00780 Biotin metabolism 2
nta01212 Fatty acid metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 8
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 11
sbi01200 Carbon metabolism 3
sbi00020 Citrate cycle (TCA cycle) 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 6
bdi00020 Citrate cycle (TCA cycle) 3
bdi01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00190 Oxidative phosphorylation 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820406 103870262 103859436 103845648 111214134 106435411 106418555 121215538 107915169 107896380 102608946 100814371 100499925 100791392 100258272 18094349 11446007 101251020 102587609 107824967 107773085 142173844 4344058 100194239 123044029 123051906 123187788 123425075 8069571 100845666 5719732
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