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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-u.5   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.9   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-e.2   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.4.bio   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.4.hor   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.4.lig   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.4.str   PRPS20   chloroplast 30S ribosomal protein S20 
 ath-m.4.tis   PRPS20   chloroplast 30S ribosomal protein S20 
 bra-r.6   103869949   30S ribosomal protein S20, chloroplastic 
 bra-r.6   103859614   30S ribosomal protein S20, chloroplastic 
 bra-r.6   103841657   30S ribosomal protein S20, chloroplastic 
 bna-r.1   125603865   30S ribosomal protein S20, chloroplastic-like 
 bna-r.1   125580469   30S ribosomal protein S20, chloroplastic-like 
 bna-r.1   111215700   30S ribosomal protein S20, chloroplastic-like 
 ghi-r.1   107948757   30S ribosomal protein S20, chloroplastic 
 ghi-r.1   107944081   30S ribosomal protein S20, chloroplastic 
 cit-r.1   102616817   30S ribosomal protein S20, chloroplastic 
 gma-u.5   100786192   30S ribosomal protein S20, chloroplastic-like 
 gma-u.5   100499656   30S ribosomal protein S20, chloroplastic 
 vvi-u.5   100265925   small ribosomal subunit protein bS20c 
 ppo-u.5   18095545   30S ribosomal protein S20, chloroplastic 
 mtr-u.5   11413544   30S ribosomal protein S20, chloroplastic 
 sly-u.5   101261139   small ribosomal subunit protein bS20c 
 sot-r.1   102597213   30S ribosomal protein S20, chloroplastic 
 nta-r.1   107776799   small ribosomal subunit protein bS20c-like 
 nta-r.1   107812357   small ribosomal subunit protein bS20c 
 nta-r.1   107805834   small ribosomal subunit protein bS20c 
 osa-u.5   ASL1   Albino Seedling Lethal1 
 zma-u.5   100286220   30S ribosomal protein S20, chloroplastic-like 
 tae-r.2   123061887   30S ribosomal protein S20, chloroplastic 
 tae-r.2   123070582   30S ribosomal protein S20, chloroplastic 
 tae-r.2   123078986   30S ribosomal protein S20, chloroplastic 
 hvu-r.1   123444104   30S ribosomal protein S20, chloroplastic 
 sbi-r.1   8068015   30S ribosomal protein S20, chloroplastic 
 bdi-r.1   100837078   30S ribosomal protein S20, chloroplastic 
 cre-r.1   CHLRE_12g494750v5   uncharacterized protein 

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Top 50 coexpressed genes to PRPS20 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PRPS20 (ath-r.7 coexpression data)

CoexMap"820750"


athPRPS20 | Entrez gene ID : 820750      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  IDA  
Protein NP_188137.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 10  (predict for NP_188137.1)
Subcellular
localization
TargetP
chlo 9  (predict for NP_188137.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
PRPS20
ath-u.5
for
PRPS20
ath-m.9
for
PRPS20
ath-e.2
for
PRPS20
ath-m.4.bio
for
PRPS20
ath-m.4.hor
for
PRPS20
ath-m.4.lig
for
PRPS20
ath-m.4.str
for
PRPS20
ath-m.4.tis
for
PRPS20
bra-r.6
for
103869949
bra-r.6
for
103859614
bra-r.6
for
103841657
bna-r.1
for
125603865
bna-r.1
for
125580469
bna-r.1
for
111215700
ghi-r.1
for
107948757
ghi-r.1
for
107944081
cit-r.1
for
102616817
gma-u.5
for
100786192
gma-u.5
for
100499656
vvi-u.5
for
100265925
ppo-u.5
for
18095545
mtr-u.5
for
11413544
sly-u.5
for
101261139
sot-r.1
for
102597213
nta-r.1
for
107776799
nta-r.1
for
107812357
nta-r.1
for
107805834
osa-u.5
for
ASL1
zma-u.5
for
100286220
tae-r.2
for
123061887
tae-r.2
for
123070582
tae-r.2
for
123078986
hvu-r.1
for
123444104
sbi-r.1
for
8068015
bdi-r.1
for
100837078
cre-r.1
for
CHLRE_12g494750v5


Ortholog ID: 5993
Species ath bra bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol PRPS20 LOC103869949 LOC103859614 LOC103841657 LOC125603865 LOC111215700 LOC106405949 LOC107948757 LOC107944081 LOC102616817 LOC100786192 LOC100499656 LOC100265925 LOC18095545 LOC11413544 LOC101261139 LOC102597213 LOC107776799 LOC107812357 LOC107805834 ASL1 LOC100286220 LOC123061887 LOC123070582 LOC123078986 LOC123444104 LOC8068015 LOC100837078 CHLRE_12g494750v5
Function* chloroplast 30S ribosomal protein S20 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c 30S ribosomal protein S20, chloroplastic small ribosomal subunit protein bS20c-like small ribosomal subunit protein bS20c small ribosomal subunit protein bS20c Albino Seedling Lethal1 30S ribosomal protein S20, chloroplastic-like 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic 30S ribosomal protein S20, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 13
ath01240 Biosynthesis of cofactors 2
ath00240 Pyrimidine metabolism 2
ath01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
cit00195 Photosynthesis 2
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 16
gma03015 mRNA surveillance pathway 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 12
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820750 103869949 103859614 103841657 125603865 111215700 106405949 107948757 107944081 102616817 100786192 100499656 100265925 18095545 11413544 101261139 102597213 107776799 107812357 107805834 4325273 100286220 123061887 123070582 123078986 123444104 8068015 100837078 5726079
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