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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT4G02530   chloroplast thylakoid lumen protein 
 ath-u.5   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.9   AT4G02530   chloroplast thylakoid lumen protein 
 ath-e.2   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.4.bio   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.4.hor   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.4.lig   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.4.str   AT4G02530   chloroplast thylakoid lumen protein 
 ath-m.4.tis   AT4G02530   chloroplast thylakoid lumen protein 
 bra-r.6   103836735   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 bna-r.1   106439326   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 ghi-r.1   107953693   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 ghi-r.1   107933135   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 cit-r.1   102612160   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 gma-u.5   100812589   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 gma-u.5   100794397   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 vvi-u.5   100257780   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 ppo-u.5   7485468   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 ppo-u.5   7470090   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 mtr-u.5   25480916   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 sly-u.5   101259513   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 sot-r.1   102596967   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 nta-r.1   107811031   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 nta-r.1   107771896   thylakoid lumenal 16.5 kDa protein, chloroplastic-like 
 osa-u.5   4342001   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 tae-r.2   123171591   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 tae-r.2   123161995   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 tae-r.2   123148583   uncharacterized LOC123148583 
 hvu-r.1   123407145   thylakoid lumenal 16.5 kDa protein, chloroplastic-like 
 sbi-r.1   8064954   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 bdi-r.1   100825081   thylakoid lumenal 16.5 kDa protein, chloroplastic 
 cre-r.1   CHLRE_06g256250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT4G02530 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G02530 (ath-r.7 coexpression data)

CoexMap"827927"


athAT4G02530 | Entrez gene ID : 827927      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa tae hvu sbi bdi cre zma
Paralog 9 1 1 2 1 2 1 2 1 1 1 2 1 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010206 [list] [network] photosystem II repair  (13 genes)  IEA IMP  
GO CC
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA IDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (507 genes)  HDA  
GO:0009941 [list] [network] chloroplast envelope  (585 genes)  HDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0062068 [list] [network] chloroplast photosystem II binding  (2 genes)  IPI  
Protein NP_001319849.1 [sequence] [blastp]
NP_001328709.1 [sequence] [blastp]
NP_192162.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_001319849.1)
chlo 5,  nucl 1,  golg 1,  cyto 1,  mito 1,  plas 1,  cysk_nucl 1,  mito_plas 1,  cyto_plas 1  (predict for NP_001328709.1)
mito 6,  chlo 3,  cyto_mito 3,  mito_plas 3  (predict for NP_192162.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001319849.1)
other 5,  mito 5  (predict for NP_001328709.1)
other 5,  mito 5  (predict for NP_192162.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT4G02530
ath-u.5
for
AT4G02530
ath-m.9
for
AT4G02530
ath-e.2
for
AT4G02530
ath-m.4.bio
for
AT4G02530
ath-m.4.hor
for
AT4G02530
ath-m.4.lig
for
AT4G02530
ath-m.4.str
for
AT4G02530
ath-m.4.tis
for
AT4G02530
bra-r.6
for
103836735
bna-r.1
for
106439326
ghi-r.1
for
107953693
ghi-r.1
for
107933135
cit-r.1
for
102612160
gma-u.5
for
100812589
gma-u.5
for
100794397
vvi-u.5
for
100257780
ppo-u.5
for
7485468
ppo-u.5
for
7470090
mtr-u.5
for
25480916
sly-u.5
for
101259513
sot-r.1
for
102596967
nta-r.1
for
107811031
nta-r.1
for
107771896
osa-u.5
for
4342001
tae-r.2
for
123171591
tae-r.2
for
123161995
tae-r.2
for
123148583
hvu-r.1
for
123407145
sbi-r.1
for
8064954
bdi-r.1
for
100825081
cre-r.1
for
CHLRE_06g256250v5


Ortholog ID: 10203
Species ath bra bna ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa tae tae tae hvu sbi bdi cre
Symbol AT4G02530 LOC103836735 LOC106439326 LOC107953693 LOC107933135 LOC102612160 LOC100812589 LOC100794397 LOC100257780 LOC7485468 LOC7470090 LOC25480916 LOC101259513 LOC102596967 LOC107811031 LOC107771896 LOC4342001 LOC123171591 LOC123161995 LOC123148583 LOC123407145 LOC8064954 LOC100825081 CHLRE_06g256250v5
Function* chloroplast thylakoid lumen protein thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic-like thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic uncharacterized LOC123148583 thylakoid lumenal 16.5 kDa protein, chloroplastic-like thylakoid lumenal 16.5 kDa protein, chloroplastic thylakoid lumenal 16.5 kDa protein, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 13
bna01200 Carbon metabolism 13
bna00630 Glyoxylate and dicarboxylate metabolism 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
ghi00051 Fructose and mannose metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00195 Photosynthesis 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 4
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 3
gma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 3
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr00195 Photosynthesis 6
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 4
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00195 Photosynthesis 4
nta00906 Carotenoid biosynthesis 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00195 Photosynthesis 4
nta00906 Carotenoid biosynthesis 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 3
osa00195 Photosynthesis 3
osa00710 Carbon fixation by Calvin cycle 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 8
tae01200 Carbon metabolism 8
tae00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 7
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 6
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00710 Carbon fixation by Calvin cycle 3
bdi01230 Biosynthesis of amino acids 3
bdi00190 Oxidative phosphorylation 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00195 Photosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827927 103836735 106439326 107953693 107933135 102612160 100812589 100794397 100257780 7485468 7470090 25480916 101259513 102596967 107811031 107771896 4342001 123171591 123161995 123148583 123407145 8064954 100825081 5722119
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