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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   RMA3   RING membrane-anchor 3 
 ath-u.5   RMA3   RING membrane-anchor 3 
 ath-m.9   RMA3   RING membrane-anchor 3 
 ath-e.2   RMA3   RING membrane-anchor 3 
 ath-m.4.bio   RMA3   RING membrane-anchor 3 
 ath-m.4.hor   RMA3   RING membrane-anchor 3 
 ath-m.4.lig   RMA3   RING membrane-anchor 3 
 ath-m.4.str   RMA3   RING membrane-anchor 3 
 ath-m.4.tis   RMA3   RING membrane-anchor 3 
 ath-u.5   RMA1   RING membrane-anchor 1 
 ath-u.5   RMA2   RING membrane-anchor 2 
 bra-r.6   103846598   E3 ubiquitin-protein ligase RMA1 
 bra-r.6   103867189   E3 ubiquitin-protein ligase RMA3 
 bra-r.6   103861695   E3 ubiquitin-protein ligase RMA3 
 bna-r.1   106413753   E3 ubiquitin-protein ligase RMA2 
 bna-r.1   106407488   E3 ubiquitin-protein ligase RMA2 
 bna-r.1   106347616   E3 ubiquitin-protein ligase RMA1-like 
 ghi-r.1   107905778   E3 ubiquitin-protein ligase RMA1H1 
 ghi-r.1   107909299   E3 ubiquitin-protein ligase RMA1H1 
 ghi-r.1   107898950   E3 ubiquitin-protein ligase RMA1H1 
 cit-r.1   102629340   E3 ubiquitin-protein ligase RMA1H1 
 cit-r.1   102620748   E3 ubiquitin-protein ligase RMA3 
 gma-u.5   100779793   E3 ubiquitin-protein ligase RMA1H1 
 gma-u.5   100780643   E3 ubiquitin-protein ligase RMA1H1 
 gma-u.5   100782827   E3 ubiquitin-protein ligase RMA1H1 
 vvi-u.5   100265502   E3 ubiquitin-protein ligase RMA1H1-like 
 vvi-u.5   100255559   E3 ubiquitin-protein ligase RMA1H1 
 vvi-u.5   100257429   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   18095597   E3 ubiquitin-protein ligase RMA3 
 ppo-u.5   18104643   E3 ubiquitin-protein ligase RMA1H1 
 ppo-u.5   18103016   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25487651   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25485936   E3 ubiquitin-protein ligase RMA1H1 
 mtr-u.5   25493170   E3 ubiquitin-protein ligase RMA3 
 sly-u.5   101254012   E3 ubiquitin-protein ligase RMA3-like 
 sly-u.5   101253976   E3 ubiquitin-protein ligase RMA1H1-like 
 sly-u.5   101248949   E3 ubiquitin-protein ligase RMA3 
 sot-r.1   102606315   E3 ubiquitin-protein ligase RMA1H1-like 
 sot-r.1   102587708   E3 ubiquitin-protein ligase RMA3-like 
 sot-r.1   102600790   E3 ubiquitin-protein ligase RMA1H1-like 
 nta-r.1   107791648   E3 ubiquitin-protein ligase RMA1H1-like 
 nta-r.1   107796633   E3 ubiquitin-protein ligase RMA1H1-like 
 nta-r.1   107800076   E3 ubiquitin-protein ligase RMA1H1 
 osa-u.5   4330106   E3 ubiquitin-protein ligase RMA2 
 osa-u.5   4336483   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   103627470   E3 ubiquitin-protein ligase RMA1H1 
 zma-u.5   100286356   uncharacterized LOC100286356 
 zma-u.5   100192071   uncharacterized LOC100192071 
 tae-r.2   123189813   E3 ubiquitin-protein ligase RMA1H1 
 tae-r.2   123144931   E3 ubiquitin-protein ligase RMA1H1 
 tae-r.2   123127837   E3 ubiquitin-protein ligase RMA1H1 
 hvu-r.1   123405483   E3 ubiquitin-protein ligase RMA1H1-like 
 hvu-r.1   123427323   E3 ubiquitin-protein ligase RMA1H1-like 
 sbi-r.1   8074809   E3 ubiquitin-protein ligase RMA1H1 
 sbi-r.1   8082878   E3 ubiquitin-protein ligase RMA1H1 
 bdi-r.1   106865399   E3 ubiquitin-protein ligase RMA1H1-like 
 bdi-r.1   100835684   E3 ubiquitin-protein ligase RMA1H1 

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Top 50 coexpressed genes to RMA3 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RMA3 (ath-r.7 coexpression data)

CoexMap"828856"


athRMA3 | Entrez gene ID : 828856      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 3 3 3 3 3 3 2 3 3 2 2 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)
GO BP
GO:0071456 [list] [network] cellular response to hypoxia  (241 genes)  HEP  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_194477.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  golg 3,  chlo 1,  cyto 1,  mito 1,  E.R. 1,  chlo_mito 1,  cyto_E.R. 1  (predict for NP_194477.2)
Subcellular
localization
TargetP
other 8  (predict for NP_194477.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
RMA3
ath-u.5
for
RMA3
ath-m.9
for
RMA3
ath-e.2
for
RMA3
ath-m.4.bio
for
RMA3
ath-m.4.hor
for
RMA3
ath-m.4.lig
for
RMA3
ath-m.4.str
for
RMA3
ath-m.4.tis
for
RMA3
ath-u.5
for
RMA1
ath-u.5
for
RMA2
bra-r.6
for
103846598
bra-r.6
for
103867189
bra-r.6
for
103861695
bna-r.1
for
106413753
bna-r.1
for
106407488
bna-r.1
for
106347616
ghi-r.1
for
107905778
ghi-r.1
for
107909299
ghi-r.1
for
107898950
cit-r.1
for
102629340
cit-r.1
for
102620748
gma-u.5
for
100779793
gma-u.5
for
100780643
gma-u.5
for
100782827
vvi-u.5
for
100265502
vvi-u.5
for
100255559
vvi-u.5
for
100257429
ppo-u.5
for
18095597
ppo-u.5
for
18104643
ppo-u.5
for
18103016
mtr-u.5
for
25487651
mtr-u.5
for
25485936
mtr-u.5
for
25493170
sly-u.5
for
101254012
sly-u.5
for
101253976
sly-u.5
for
101248949
sot-r.1
for
102606315
sot-r.1
for
102587708
sot-r.1
for
102600790
nta-r.1
for
107791648
nta-r.1
for
107796633
nta-r.1
for
107800076
osa-u.5
for
4330106
osa-u.5
for
4336483
zma-u.5
for
103627470
zma-u.5
for
100286356
zma-u.5
for
100192071
tae-r.2
for
123189813
tae-r.2
for
123144931
tae-r.2
for
123127837
hvu-r.1
for
123405483
hvu-r.1
for
123427323
sbi-r.1
for
8074809
sbi-r.1
for
8082878
bdi-r.1
for
106865399
bdi-r.1
for
100835684


Ortholog ID: 734
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi
Symbol RMA3 RMA1 RMA2 LOC103867189 LOC103867947 LOC103861821 LOC106407488 LOC106435119 LOC106445896 LOC121203012 LOC107925295 LOC107928842 LOC102629340 LOC102620748 LOC100779793 LOC100785491 LOC100807729 LOC100265502 LOC100255559 LOC100257429 LOC18104643 LOC18108562 LOC7477410 LOC25487651 LOC25487645 LOC120577629 LOC101253976 LOC101262152 MKB1 LOC102600465 LOC102579222 LOC102595619 LOC107791648 LOC107800076 LOC107787283 LOC4330106 LOC4336483 LOC103627470 LOC100286356 LOC100192071 LOC123189813 LOC123127837 LOC123134274 LOC123405483 LOC123427323 LOC8074809 LOC8082878 LOC106865399 LOC100835684
Function* RING membrane-anchor 3 RING membrane-anchor 1 RING membrane-anchor 2 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA1 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA3 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 RING-finger E3 ubiquitin ligase Makibishi 1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA3-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA3-like E3 ubiquitin-protein ligase RMA2 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 uncharacterized LOC100286356 uncharacterized LOC100192071 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1 E3 ubiquitin-protein ligase RMA1H1-like E3 ubiquitin-protein ligase RMA1H1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
gma00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
gma00600 Sphingolipid metabolism 2
gma04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 3
vvi00500 Starch and sucrose metabolism 2
vvi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00908 Zeatin biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 4
sly00996 Biosynthesis of various alkaloids 2
sly00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00100 Steroid biosynthesis 5
sot00996 Biosynthesis of various alkaloids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 6
nta00010 Glycolysis / Gluconeogenesis 5
nta00620 Pyruvate metabolism 5
nta01200 Carbon metabolism 5
nta00020 Citrate cycle (TCA cycle) 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 5
nta00620 Pyruvate metabolism 5
nta01200 Carbon metabolism 5
nta00020 Citrate cycle (TCA cycle) 4
nta00260 Glycine, serine and threonine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 3
tae00030 Pentose phosphate pathway 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 3
tae00941 Flavonoid biosynthesis 3
tae00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00562 Inositol phosphate metabolism 2
bdi04070 Phosphatidylinositol signaling system 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828856 825654 828942 103867189 103867947 103861821 106407488 106435119 106445896 121203012 107925295 107928842 102629340 102620748 100779793 100785491 100807729 100265502 100255559 100257429 18104643 18108562 7477410 25487651 25487645 120577629 101253976 101262152 101262459 102600465 102579222 102595619 107791648 107800076 107787283 4330106 4336483 103627470 100286356 100192071 123189813 123127837 123134274 123405483 123427323 8074809 8082878 106865399 100835684
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