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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   RRTF1   redox responsive transcription factor 1 
 ath-u.5   RRTF1   redox responsive transcription factor 1 
 ath-m.9   RRTF1   redox responsive transcription factor 1 
 ath-e.2   RRTF1   redox responsive transcription factor 1 
 ath-m.4.bio   RRTF1   redox responsive transcription factor 1 
 ath-m.4.hor   RRTF1   redox responsive transcription factor 1 
 ath-m.4.lig   RRTF1   redox responsive transcription factor 1 
 ath-m.4.str   RRTF1   redox responsive transcription factor 1 
 ath-m.4.tis   RRTF1   redox responsive transcription factor 1 
 bra-r.6   103838346   ethylene-responsive transcription factor ERF109 
 bra-r.6   103834418   ethylene-responsive transcription factor ERF109-like 
 bra-r.6   103862348   ethylene-responsive transcription factor ERF109-like 
 bna-r.1   125580552   ethylene-responsive transcription factor ERF109-like 
 bna-r.1   106434449   ethylene-responsive transcription factor ERF109-like 
 bna-r.1   106356256   ethylene-responsive transcription factor ERF109-like 
 ghi-r.1   107953399   ethylene-responsive transcription factor ERF109 
 ghi-r.1   107937944   ethylene-responsive transcription factor ERF109-like 
 ghi-r.1   107927855   ethylene-responsive transcription factor ERF109 
 cit-r.1   102615840   ethylene-responsive transcription factor ERF109 
 cit-r.1   107178612   ethylene-responsive transcription factor ERF109-like 
 gma-u.5   100794381   ethylene-responsive transcription factor ERF109 
 gma-u.5   100820426   uncharacterized LOC100820426 
 vvi-u.5   100260566   ethylene-responsive transcription factor ERF109 
 ppo-u.5   18097788   ethylene-responsive transcription factor ERF109 
 ppo-u.5   7490035   ethylene-responsive transcription factor ERF109 
 mtr-u.5   11443959   ethylene-responsive transcription factor ERF109 
 mtr-u.5   11441424   ethylene-responsive transcription factor ERF109 
 sly-u.5   ERF-D4   ethylene response factor D.4 
 sly-u.5   ERF-D3   ethylene response factor D.3 
 sot-r.1   102606090   ethylene-responsive transcription factor ERF109-like 
 sot-r.1   102598046   ethylene-responsive transcription factor ERF109-like 
 sot-r.1   102605756   ethylene-responsive transcription factor ERF109-like 
 nta-r.1   107820624   ethylene-responsive transcription factor ERF109 
 nta-r.1   107771196   ethylene-responsive transcription factor ERF109-like 
 nta-r.1   107811677   ethylene-responsive transcription factor ERF109-like 
 osa-u.5   4345815   ethylene-responsive transcription factor ERF109 
 osa-u.5   4347266   ethylene-responsive transcription factor ERF109 
 zma-u.5   100280788   ethylene-responsive element binding protein 2 
 zma-u.5   103647485   ethylene-responsive transcription factor ERF109-like 
 zma-u.5   100283357   AP2 domain containing protein 
 tae-r.2   123180479   ethylene-responsive transcription factor ERF109 
 tae-r.2   123116279   ethylene-responsive transcription factor ERF109 
 tae-r.2   123174929   ethylene-responsive transcription factor ERF109 
 hvu-r.1   123449037   ethylene-responsive transcription factor ERF109-like 
 sbi-r.1   8073624   ethylene-responsive transcription factor ABR1 
 sbi-r.1   8083217   ethylene-responsive transcription factor ERF109 
 sbi-r.1   8083540   ethylene-responsive transcription factor ERF109 
 bdi-r.1   100834335   ethylene-responsive transcription factor ERF109 

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Top 50 coexpressed genes to RRTF1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RRTF1 (ath-r.7 coexpression data)

CoexMap"829591"


athRRTF1 | Entrez gene ID : 829591      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 3 2 2 1 2 2 2 3 3 2 3 3 1 3 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0062211 [list] [network] root regeneration  (4 genes)  IMP  
GO:0090357 [list] [network] regulation of L-tryptophan metabolic process  (6 genes)  IEP  
GO:0010928 [list] [network] regulation of auxin mediated signaling pathway  (48 genes)  IEP  
GO:0010087 [list] [network] phloem or xylem histogenesis  (125 genes)  IEP  
GO:0051301 [list] [network] cell division  (192 genes)  IEP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_195167.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_195167.1)
Subcellular
localization
TargetP
other 5,  mito 4  (predict for NP_195167.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
RRTF1
ath-u.5
for
RRTF1
ath-m.9
for
RRTF1
ath-e.2
for
RRTF1
ath-m.4.bio
for
RRTF1
ath-m.4.hor
for
RRTF1
ath-m.4.lig
for
RRTF1
ath-m.4.str
for
RRTF1
ath-m.4.tis
for
RRTF1
bra-r.6
for
103838346
bra-r.6
for
103834418
bra-r.6
for
103862348
bna-r.1
for
125580552
bna-r.1
for
106434449
bna-r.1
for
106356256
ghi-r.1
for
107953399
ghi-r.1
for
107937944
ghi-r.1
for
107927855
cit-r.1
for
102615840
cit-r.1
for
107178612
gma-u.5
for
100794381
gma-u.5
for
100820426
vvi-u.5
for
100260566
ppo-u.5
for
18097788
ppo-u.5
for
7490035
mtr-u.5
for
11443959
mtr-u.5
for
11441424
sly-u.5
for
ERF-D4
sly-u.5
for
ERF-D3
sot-r.1
for
102606090
sot-r.1
for
102598046
sot-r.1
for
102605756
nta-r.1
for
107820624
nta-r.1
for
107771196
nta-r.1
for
107811677
osa-u.5
for
4345815
osa-u.5
for
4347266
zma-u.5
for
100280788
zma-u.5
for
103647485
zma-u.5
for
100283357
tae-r.2
for
123180479
tae-r.2
for
123116279
tae-r.2
for
123174929
hvu-r.1
for
123449037
sbi-r.1
for
8073624
sbi-r.1
for
8083217
sbi-r.1
for
8083540
bdi-r.1
for
100834335


Ortholog ID: 1762
Species ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma ppo ppo mtr mtr mtr sly sly sot sot sot nta nta osa osa zma zma zma tae tae tae hvu sbi sbi sbi bdi
Symbol RRTF1 LOC103838346 LOC103834418 LOC103862348 LOC125580552 LOC106356256 LOC111207517 LOC107937944 LOC107927855 LOC107908908 LOC102615840 LOC107178612 LOC100794381 LOC100820426 LOC18097788 LOC7490035 LOC11441424 LOC11444521 LOC25493033 ERF-D4 ERF-D3 LOC102606090 LOC102598046 LOC102605756 LOC107771196 LOC107773005 LOC4345815 LOC4347266 LOC100280788 LOC103647485 LOC100283357 LOC123174929 LOC123174943 LOC123174921 LOC123449037 LOC8073624 LOC8083217 LOC8083540 LOC100834335
Function* redox responsive transcription factor 1 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 uncharacterized LOC100820426 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene response factor D.4 ethylene response factor D.3 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive element binding protein 2 ethylene-responsive transcription factor ERF109-like AP2 domain containing protein ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109-like ethylene-responsive transcription factor ABR1 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109 ethylene-responsive transcription factor ERF109
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
bna00270 Cysteine and methionine metabolism 2
bna00350 Tyrosine metabolism 2
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 4
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 4
sbi04075 Plant hormone signal transduction 4
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829591 103838346 103834418 103862348 125580552 106356256 111207517 107937944 107927855 107908908 102615840 107178612 100794381 100820426 18097788 7490035 11441424 11444521 25493033 101246484 101267746 102606090 102598046 102605756 107771196 107773005 4345815 4347266 100280788 103647485 100283357 123174929 123174943 123174921 123449037 8073624 8083217 8083540 100834335
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