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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.lig   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   BIM1   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   BIM3   BES1-interacting Myc-like protein 3 
 ath-u.5   BIM2   BES1-interacting Myc-like protein 2 
 bra-r.6   103854916   transcription factor BIM1 
 bra-r.6   103855759   transcription factor BIM1 
 bra-r.6   103852546   transcription factor BIM2 
 bna-r.1   125582025   transcription factor BIM1-like 
 bna-r.1   106384985   transcription factor BIM1-like 
 bna-r.1   106404673   transcription factor BIM1 
 ghi-r.1   107903920   transcription factor BIM2 
 ghi-r.1   107931413   transcription factor BIM1 
 ghi-r.1   107934764   transcription factor BIM2 
 cit-r.1   102629701   transcription factor BIM1 
 cit-r.1   102618719   transcription factor BIM3 
 cit-r.1   102626813   transcription factor BIM2 
 gma-u.5   100816055   transcription factor BIM2-like 
 gma-u.5   100808016   transcription factor BIM1 
 gma-u.5   100800999   transcription factor BIM1 
 vvi-u.5   109123264   uncharacterized LOC109123264 
 vvi-u.5   100246438   transcription factor BIM2 
 vvi-u.5   100246122   transcription factor BIM2 
 ppo-u.5   7482242   transcription factor BIM2 
 ppo-u.5   18097667   transcription factor BIM2 
 ppo-u.5   7487119   transcription factor BIM1 
 mtr-u.5   11431634   transcription factor BIM2 
 mtr-u.5   11428511   transcription factor BIM2 
 mtr-u.5   25493922   transcription factor BIM1 
 sly-u.5   101254588   transcription factor BIM2-like 
 sly-u.5   101258066   transcription factor BIM2-like 
 sly-u.5   101260613   transcription factor BIM2 
 sot-r.1   102599241   uncharacterized LOC102599241 
 sot-r.1   102598923   transcription factor BIM2-like 
 sot-r.1   102579730   transcription factor BIM1 
 nta-r.1   107796326   transcription factor BIM2 
 nta-r.1   107796159   transcription factor BIM2 
 nta-r.1   107830890   transcription factor BIM1-like 
 osa-u.5   4330593   transcription factor BIM2 
 osa-u.5   4345899   transcription factor BIM2 
 osa-u.5   4347359   transcription factor BIM2 
 zma-u.5   100273866   uncharacterized LOC100273866 
 zma-u.5   100191909   uncharacterized LOC100191909 
 zma-u.5   100279738   Transcription factor BIM3 
 tae-r.2   123104068   transcription factor BIM1 
 tae-r.2   123121815   transcription factor BIM1 
 tae-r.2   123138096   transcription factor BIM2 
 hvu-r.1   123411146   transcription factor BIM2-like 
 hvu-r.1   123404245   transcription factor BIM2-like 
 hvu-r.1   123399101   transcription factor BIM1-like 
 sbi-r.1   8063743   transcription factor BIM2 
 sbi-r.1   8055367   transcription factor BIM1 
 bdi-r.1   100832564   transcription factor BIM2 
 bdi-r.1   100826888   transcription factor BIM2 
 bdi-r.1   100837123   transcription factor BIM2 
 cre-r.1   CHLRE_14g620850v5   uncharacterized protein 

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Top 50 coexpressed genes to BIM1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BIM1 (ath-r.7 coexpression data)

CoexMap"830708"


athBIM1 | Entrez gene ID : 830708      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:1902448 [list] [network] positive regulation of shade avoidance  (4 genes)  IMP  
GO:0009742 [list] [network] brassinosteroid mediated signaling pathway  (60 genes)  IGI  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IEA IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA IEA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001119190.1 [sequence] [blastp]
NP_001190257.1 [sequence] [blastp]
NP_001190258.1 [sequence] [blastp]
NP_001190259.1 [sequence] [blastp]
NP_001318507.1 [sequence] [blastp]
NP_001318508.1 [sequence] [blastp]
NP_001330723.1 [sequence] [blastp]
NP_001330724.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001119190.1)
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001190257.1)
nucl 9  (predict for NP_001190258.1)
nucl 9  (predict for NP_001190259.1)
nucl 10  (predict for NP_001318507.1)
nucl 10  (predict for NP_001318508.1)
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001330723.1)
nucl 9  (predict for NP_001330724.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_001119190.1)
mito 5,  other 3  (predict for NP_001190257.1)
mito 4,  other 3  (predict for NP_001190258.1)
mito 4,  other 3  (predict for NP_001190259.1)
other 8  (predict for NP_001318507.1)
other 8  (predict for NP_001318508.1)
mito 5,  other 3  (predict for NP_001330723.1)
mito 4,  other 3  (predict for NP_001330724.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
BIM1
ath-u.5
for
BIM1
ath-m.9
for
BIM1
ath-e.2
for
BIM1
ath-m.4.bio
for
BIM1
ath-m.4.hor
for
BIM1
ath-m.4.lig
for
BIM1
ath-m.4.str
for
BIM1
ath-m.4.tis
for
BIM1
ath-u.5
for
BIM3
ath-u.5
for
BIM2
bra-r.6
for
103854916
bra-r.6
for
103855759
bra-r.6
for
103852546
bna-r.1
for
125582025
bna-r.1
for
106384985
bna-r.1
for
106404673
ghi-r.1
for
107903920
ghi-r.1
for
107931413
ghi-r.1
for
107934764
cit-r.1
for
102629701
cit-r.1
for
102618719
cit-r.1
for
102626813
gma-u.5
for
100816055
gma-u.5
for
100808016
gma-u.5
for
100800999
vvi-u.5
for
109123264
vvi-u.5
for
100246438
vvi-u.5
for
100246122
ppo-u.5
for
7482242
ppo-u.5
for
18097667
ppo-u.5
for
7487119
mtr-u.5
for
11431634
mtr-u.5
for
11428511
mtr-u.5
for
25493922
sly-u.5
for
101254588
sly-u.5
for
101258066
sly-u.5
for
101260613
sot-r.1
for
102599241
sot-r.1
for
102598923
sot-r.1
for
102579730
nta-r.1
for
107796326
nta-r.1
for
107796159
nta-r.1
for
107830890
osa-u.5
for
4330593
osa-u.5
for
4345899
osa-u.5
for
4347359
zma-u.5
for
100273866
zma-u.5
for
100191909
zma-u.5
for
100279738
tae-r.2
for
123104068
tae-r.2
for
123121815
tae-r.2
for
123138096
hvu-r.1
for
123411146
hvu-r.1
for
123404245
hvu-r.1
for
123399101
sbi-r.1
for
8063743
sbi-r.1
for
8055367
bdi-r.1
for
100832564
bdi-r.1
for
100826888
bdi-r.1
for
100837123
cre-r.1
for
CHLRE_14g620850v5


Ortholog ID: 998
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol BIM1 BIM3 BIM2 LOC103854916 LOC103852546 LOC103831309 LOC106404673 LOC106439973 LOC106393409 LOC107931413 LOC107934764 LOC121209640 LOC102629701 LOC102618719 LOC102626813 LOC100808016 LOC100795416 LOC100792653 LOC100246438 LOC100246122 LOC100243993 LOC7482242 LOC18097667 LOC7483907 LOC11431634 LOC11428511 LOC25493922 LOC101258066 LOC101260613 LOC101264225 LOC102599241 LOC102598923 LOC102579730 LOC107796326 LOC107830890 LOC107785031 LOC4330593 LOC4345899 LOC4347359 LOC100273866 LOC100191909 LOC100279738 LOC123138096 LOC123161900 LOC123411146 LOC123404245 LOC123399101 LOC8063743 LOC8055367 LOC100832564 LOC100826888 LOC100837123 CHLRE_14g620850v5
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein BES1-interacting Myc-like protein 3 BES1-interacting Myc-like protein 2 transcription factor BIM1 transcription factor BIM2 transcription factor BIM2 transcription factor BIM1 transcription factor BIM1 transcription factor BIM2-like transcription factor BIM1 transcription factor BIM2 transcription factor BIM1 transcription factor BIM1 transcription factor BIM3 transcription factor BIM2 transcription factor BIM1 transcription factor BIM2-like transcription factor BIM2-like transcription factor BIM2 transcription factor BIM2 transcription factor BIM1 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 transcription factor BIM1 transcription factor BIM2-like transcription factor BIM2 transcription factor BIM1 uncharacterized LOC102599241 transcription factor BIM2-like transcription factor BIM1 transcription factor BIM2 transcription factor BIM1-like transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 uncharacterized LOC100273866 uncharacterized LOC100191909 Transcription factor BIM3 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2-like transcription factor BIM2-like transcription factor BIM1-like transcription factor BIM2 transcription factor BIM1 transcription factor BIM2 transcription factor BIM2 transcription factor BIM2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 2
bna00100 Steroid biosynthesis 2
bna00909 Sesquiterpenoid and triterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00240 Pyrimidine metabolism 2
mtr00410 beta-Alanine metabolism 2
mtr00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 2
nta00460 Cyanoamino acid metabolism 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00670 One carbon pool by folate 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04712 Circadian rhythm - plant 4
nta04517 IgSF CAM signaling 2
nta04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00350 Tyrosine metabolism 2
osa00360 Phenylalanine metabolism 2
osa00380 Tryptophan metabolism 2
osa00901 Indole alkaloid biosynthesis 2
osa00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 8
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 8
zma04016 MAPK signaling pathway - plant 4
zma04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04814 Motor proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00250 Alanine, aspartate and glutamate metabolism 2
hvu00460 Cyanoamino acid metabolism 2
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi00592 alpha-Linolenic acid metabolism 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830708 833877 843233 103854916 103852546 103831309 106404673 106439973 106393409 107931413 107934764 121209640 102629701 102618719 102626813 100808016 100795416 100792653 100246438 100246122 100243993 7482242 18097667 7483907 11431634 11428511 25493922 101258066 101260613 101264225 102599241 102598923 102579730 107796326 107830890 107785031 4330593 4345899 4347359 100273866 100191909 100279738 123138096 123161900 123411146 123404245 123399101 8063743 8055367 100832564 100826888 100837123 5715894
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