ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT5G13970	midasin-like protein
ath-u.5	AT5G13970	midasin-like protein
ath-m.9	AT5G13970	midasin-like protein
ath-e.2	AT5G13970	midasin-like protein
ath-m.4.bio	AT5G13970	midasin-like protein
ath-m.4.hor	AT5G13970	midasin-like protein
ath-m.4.lig	AT5G13970	midasin-like protein
ath-m.4.str	AT5G13970	midasin-like protein
ath-m.4.tis	AT5G13970	midasin-like protein
ath-u.5	AT5G13310	uncharacterized protein
bra-r.6	103846524	uncharacterized LOC103846524
bra-r.6	103846582	uncharacterized LOC103846582
bna-r.1	125579035	uncharacterized LOC125579035
bna-r.1	111210085	uncharacterized LOC111210085
ghi-r.1	107909515	uncharacterized LOC107909515
ghi-r.1	107934923	uncharacterized LOC107934923
ghi-r.1	107935850	uncharacterized LOC107935850
cit-r.1	102616331	hypothetical protein
cit-r.1	102623791	uncharacterized LOC102623791
gma-u.5	100820108	uncharacterized LOC100820108
gma-u.5	100819106	uncharacterized LOC100819106
vvi-u.5	100242886	uncharacterized LOC100242886
vvi-u.5	104880872	uncharacterized LOC104880872
ppo-u.5	7481180	uncharacterized LOC7481180
ppo-u.5	7488605	uncharacterized LOC7488605
ppo-u.5	7458011	uncharacterized LOC7458011
mtr-u.5	11427063	clumping factor B
sly-u.5	101252477	uncharacterized LOC101252477
sly-u.5	101246682	uncharacterized LOC101246682
sot-r.1	102579968	uncharacterized LOC102579968
sot-r.1	102581607	uncharacterized LOC102581607
nta-r.1	107782227	uncharacterized LOC107782227
nta-r.1	107761958	uncharacterized LOC107761958
osa-u.5	107280807	uncharacterized LOC107280807
zma-u.5	100382401	uncharacterized LOC100382401
zma-u.5	100382918	uncharacterized LOC100382918
tae-r.2	123189092	cyclic nucleotide-gated cation channel beta-1
tae-r.2	123053177	uncharacterized LOC123053177
tae-r.2	123045338	histone-lysine N-methyltransferase SETD1B
hvu-r.1	123426576	cyclic nucleotide-gated cation channel beta-1-like
sbi-r.1	8072028	uncharacterized LOC8072028
bdi-r.1	100846360	uncharacterized LOC100846360
bdi-r.1	100842327	uncharacterized LOC100842327

Top 50 coexpressed genes to AT5G13970 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G13970 (ath-r.7 coexpression data)

CoexMap"831245"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_196901.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9

(predict for NP_196901.1)

Subcellular
localization
TargetP

scret 4

(predict for NP_196901.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT5G13970	ath-u.5 for AT5G13970	ath-m.9 for AT5G13970	ath-e.2 for AT5G13970	ath-m.4.bio for AT5G13970	ath-m.4.hor for AT5G13970	ath-m.4.lig for AT5G13970	ath-m.4.str for AT5G13970	ath-m.4.tis for AT5G13970	ath-u.5 for AT5G13310	bra-r.6 for 103846524	bra-r.6 for 103846582	bna-r.1 for 125579035	bna-r.1 for 111210085	ghi-r.1 for 107909515	ghi-r.1 for 107934923	ghi-r.1 for 107935850	cit-r.1 for 102616331	cit-r.1 for 102623791	gma-u.5 for 100820108	gma-u.5 for 100819106	vvi-u.5 for 100242886	vvi-u.5 for 104880872	ppo-u.5 for 7481180	ppo-u.5 for 7488605	ppo-u.5 for 7458011	mtr-u.5 for 11427063	sly-u.5 for 101252477	sly-u.5 for 101246682	sot-r.1 for 102579968	sot-r.1 for 102581607	nta-r.1 for 107782227	nta-r.1 for 107761958	osa-u.5 for 107280807	zma-u.5 for 100382401	zma-u.5 for 100382918	tae-r.2 for 123189092	tae-r.2 for 123053177	tae-r.2 for 123045338	hvu-r.1 for 123426576	sbi-r.1 for 8072028	bdi-r.1 for 100846360	bdi-r.1 for 100842327

Ortholog

Ortholog ID: 4783

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

midasin-like protein

uncharacterized protein

uncharacterized LOC103846524

uncharacterized LOC103846582

uncharacterized LOC125579035

uncharacterized LOC111210085

uncharacterized LOC106370613

uncharacterized LOC107909515

uncharacterized LOC107934923

uncharacterized LOC107935850

hypothetical protein

uncharacterized LOC102623791

uncharacterized LOC100820108

uncharacterized LOC100819106

uncharacterized LOC100242886

uncharacterized LOC104880872

uncharacterized LOC7481180

uncharacterized LOC7488605

uncharacterized LOC7458011

clumping factor B

uncharacterized LOC101252477

uncharacterized LOC101246682

uncharacterized LOC102579968

uncharacterized LOC102581607

uncharacterized LOC107782227

uncharacterized LOC107761958

uncharacterized LOC107280807

uncharacterized LOC100382401

uncharacterized LOC100382918

cyclic nucleotide-gated cation channel beta-1

uncharacterized LOC123053177

histone-lysine N-methyltransferase SETD1B

cyclic nucleotide-gated cation channel beta-1-like

uncharacterized LOC8072028

uncharacterized LOC100846360

uncharacterized LOC100842327

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03083	Polycomb repressive complex	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	3
vvi01200	Carbon metabolism	3
vvi03015	mRNA surveillance pathway	2
vvi00190	Oxidative phosphorylation	2
vvi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03022	Basal transcription factors	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	2
sot04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	4
tae03040	Spliceosome	3
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	8
tae03040	Spliceosome	3
tae04144	Endocytosis	3
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	6
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	5
hvu03040	Spliceosome	3
hvu04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

831245

831172

103846524

103846582

125579035

111210085

106370613

107909515

107934923

107935850

102616331

102623791

100820108

100819106

100242886

104880872

7481180

7488605

7458011

11427063

101252477

101246682

102579968

102581607

107782227

107761958

107280807

100382401

100382918

123189092

123053177

123045338

123426576

8072028

100846360

100842327

The preparation time of this page was 2.3 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	2	2	3	2	2	2	3	1	2	2	2	1	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G13970 (ath-r.7 coexpression data)

Top 50 enrichment test to AT5G13970 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**