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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT5G28400   embryo defective protein 
 ath-u.5   AT5G28400   embryo defective protein 
 ath-e.2   AT5G28400   embryo defective protein 
 ath-u.5   emb1703   embryo defective 1703 
 ath-u.5   AT5G28320   embryo defective protein 
 bra-r.6   103830325   uncharacterized LOC103830325 
 bna-r.1   106353285   AT-rich interactive domain-containing protein 4B 
 bna-r.1   106433926   uncharacterized LOC106433926 
 ghi-r.1   107909801   uncharacterized LOC107909801 
 cit-r.1   102623508   uncharacterized LOC102623508 
 cit-r.1   127901165   uncharacterized LOC127901165 
 gma-u.5   100796285   uncharacterized LOC100796285 
 vvi-u.5   100245070   uncharacterized LOC100245070 
 ppo-u.5   7492781   uncharacterized LOC7492781 
 mtr-u.5   25500685   uncharacterized LOC25500685 
 sly-u.5   101253533   uncharacterized LOC101253533 
 sot-r.1   102584123   uncharacterized LOC102584123 
 nta-r.1   107764930   uncharacterized LOC107764930 
 nta-r.1   107786946   uncharacterized LOC107786946 

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Top 50 coexpressed genes to AT5G28400 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G28400 (ath-r.7 coexpression data)

CoexMap"832925"


athAT5G28400 | Entrez gene ID : 832925      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi osa tae hvu zma cre bdi
Paralog 5 1 2 1 2 1 1 1 1 1 1 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_198192.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  E.R. 1,  cyto_pero 1  (predict for NP_198192.4)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for NP_198192.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT5G28400
ath-u.5
for
AT5G28400
ath-e.2
for
AT5G28400
ath-u.5
for
emb1703
ath-u.5
for
AT5G28320
bra-r.6
for
103830325
bna-r.1
for
106353285
bna-r.1
for
106433926
ghi-r.1
for
107909801
cit-r.1
for
102623508
cit-r.1
for
127901165
gma-u.5
for
100796285
vvi-u.5
for
100245070
ppo-u.5
for
7492781
mtr-u.5
for
25500685
sly-u.5
for
101253533
sot-r.1
for
102584123
nta-r.1
for
107764930
nta-r.1
for
107786946


Ortholog ID: 12910
Species ath ath ath bra bna bna ghi cit cit gma vvi ppo mtr sly sot nta nta
Symbol AT5G28400 emb1703 AT5G28320 LOC103830325 LOC106353285 LOC106433926 LOC107909801 LOC102623508 LOC127901165 LOC100796285 LOC100245070 LOC7492781 LOC25500685 LOC101253533 LOC102584123 LOC107764930 LOC107786946
Function* embryo defective protein embryo defective 1703 embryo defective protein uncharacterized LOC103830325 AT-rich interactive domain-containing protein 4B uncharacterized LOC106433926 uncharacterized LOC107909801 uncharacterized LOC102623508 uncharacterized LOC127901165 uncharacterized LOC100796285 uncharacterized LOC100245070 uncharacterized LOC7492781 uncharacterized LOC25500685 uncharacterized LOC101253533 uncharacterized LOC102584123 uncharacterized LOC107764930 uncharacterized LOC107786946
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00053 Ascorbate and aldarate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832925 825351 832916 103830325 106353285 106433926 107909801 102623508 127901165 100796285 100245070 7492781 25500685 101253533 102584123 107764930 107786946
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