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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT5G53620   RNA polymerase II degradation factor 
 ath-u.5   AT5G53620   RNA polymerase II degradation factor 
 ath-m.9   AT5G53620   RNA polymerase II degradation factor 
 ath-e.2   AT5G53620   RNA polymerase II degradation factor 
 ath-m.4.bio   AT5G53620   RNA polymerase II degradation factor 
 ath-m.4.hor   AT5G53620   RNA polymerase II degradation factor 
 ath-m.4.lig   AT5G53620   RNA polymerase II degradation factor 
 ath-m.4.str   AT5G53620   RNA polymerase II degradation factor 
 ath-m.4.tis   AT5G53620   RNA polymerase II degradation factor 
 bra-r.6   103857070   cingulin 
 bna-r.1   125591246   uncharacterized LOC125591246 
 bna-r.1   106441686   cingulin 
 bna-r.1   106387465   restin homolog 
 ghi-r.1   107955218   uncharacterized LOC107955218 
 ghi-r.1   107947196   uncharacterized LOC107947196 
 ghi-r.1   107930270   interaptin 
 cit-r.1   102631129   uncharacterized LOC102631129 
 gma-u.5   100795537   uncharacterized LOC100795537 
 gma-u.5   100792159   uncharacterized LOC100792159 
 vvi-u.5   100252015   uncharacterized LOC100252015 
 ppo-u.5   7496432   uncharacterized LOC7496432 
 ppo-u.5   7464522   uncharacterized LOC7464522 
 mtr-u.5   11430812   uncharacterized LOC11430812 
 sly-u.5   101246515   uncharacterized LOC101246515 
 sot-r.1   102581741   uncharacterized LOC102581741 
 nta-r.1   107789253   uncharacterized LOC107789253 
 nta-r.1   107761715   uncharacterized LOC107761715 
 osa-u.5   4346207   uncharacterized LOC4346207 
 zma-u.5   100383560   uncharacterized LOC100383560 
 zma-u.5   100384829   uncharacterized LOC100384829 
 tae-r.2   123152260   uncharacterized LOC123152260 
 tae-r.2   123162764   uncharacterized LOC123162764 
 tae-r.2   123169798   uncharacterized LOC123169798 
 hvu-r.1   123412578   uncharacterized LOC123412578 
 sbi-r.1   8060899   uncharacterized LOC8060899 
 bdi-r.1   100831359   uncharacterized LOC100831359 

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Top 50 coexpressed genes to AT5G53620 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G53620 (ath-r.7 coexpression data)

CoexMap"835444"


athAT5G53620 | Entrez gene ID : 835444      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 3 1 2 1 2 1 1 1 2 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001078752.1 [sequence] [blastp]
NP_568795.1 [sequence] [blastp]
NP_851184.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_001078752.1)
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_568795.1)
nucl 5,  cyto_nucl 3,  chlo 3,  mito 1  (predict for NP_851184.1)
Subcellular
localization
TargetP
other 4  (predict for NP_001078752.1)
other 4  (predict for NP_568795.1)
other 4  (predict for NP_851184.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT5G53620
ath-u.5
for
AT5G53620
ath-m.9
for
AT5G53620
ath-e.2
for
AT5G53620
ath-m.4.bio
for
AT5G53620
ath-m.4.hor
for
AT5G53620
ath-m.4.lig
for
AT5G53620
ath-m.4.str
for
AT5G53620
ath-m.4.tis
for
AT5G53620
bra-r.6
for
103857070
bna-r.1
for
125591246
bna-r.1
for
106441686
bna-r.1
for
106387465
ghi-r.1
for
107955218
ghi-r.1
for
107947196
ghi-r.1
for
107930270
cit-r.1
for
102631129
gma-u.5
for
100795537
gma-u.5
for
100792159
vvi-u.5
for
100252015
ppo-u.5
for
7496432
ppo-u.5
for
7464522
mtr-u.5
for
11430812
sly-u.5
for
101246515
sot-r.1
for
102581741
nta-r.1
for
107789253
nta-r.1
for
107761715
osa-u.5
for
4346207
zma-u.5
for
100383560
zma-u.5
for
100384829
tae-r.2
for
123152260
tae-r.2
for
123162764
tae-r.2
for
123169798
hvu-r.1
for
123412578
sbi-r.1
for
8060899
bdi-r.1
for
100831359


Ortholog ID: 6996
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol AT5G53620 LOC103857070 LOC125591246 LOC106387465 LOC107955218 LOC107930270 LOC107890790 LOC102631129 LOC100795537 LOC100792159 LOC100252015 LOC7496432 LOC7464522 LOC11430812 LOC101246515 LOC102581741 LOC107789253 LOC107761715 LOC4346207 LOC100383560 LOC100384829 LOC123152260 LOC123162764 LOC123169798 LOC123412578 LOC8060899 LOC100831359
Function* RNA polymerase II degradation factor cingulin uncharacterized LOC125591246 restin homolog uncharacterized LOC107955218 interaptin uncharacterized LOC107890790 uncharacterized LOC102631129 uncharacterized LOC100795537 uncharacterized LOC100792159 uncharacterized LOC100252015 uncharacterized LOC7496432 uncharacterized LOC7464522 uncharacterized LOC11430812 uncharacterized LOC101246515 uncharacterized LOC102581741 uncharacterized LOC107789253 uncharacterized LOC107761715 uncharacterized LOC4346207 uncharacterized LOC100383560 uncharacterized LOC100384829 uncharacterized LOC123152260 uncharacterized LOC123162764 uncharacterized LOC123169798 uncharacterized LOC123412578 uncharacterized LOC8060899 uncharacterized LOC100831359
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 3
ath03410 Base excision repair 2
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 3
bra03040 Spliceosome 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi03013 Nucleocytoplasmic transport 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 4
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma04517 IgSF CAM signaling 2
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 2
ppo04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 3
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04142 Lysosome 3
mtr04144 Endocytosis 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma03018 RNA degradation 3
zma00970 Aminoacyl-tRNA biosynthesis 3
zma03015 mRNA surveillance pathway 3
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma05100 Bacterial invasion of epithelial cells 2
zma03013 Nucleocytoplasmic transport 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae00514 Other types of O-glycan biosynthesis 3
tae03083 Polycomb repressive complex 3
tae00970 Aminoacyl-tRNA biosynthesis 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
tae00514 Other types of O-glycan biosynthesis 2
tae03083 Polycomb repressive complex 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 2
hvu04382 Cornified envelope formation 2
hvu03018 RNA degradation 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 4
sbi03083 Polycomb repressive complex 2
sbi04382 Cornified envelope formation 2
sbi03013 Nucleocytoplasmic transport 2
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835444 103857070 125591246 106387465 107955218 107930270 107890790 102631129 100795537 100792159 100252015 7496432 7464522 11430812 101246515 102581741 107789253 107761715 4346207 100383560 100384829 123152260 123162764 123169798 123412578 8060899 100831359
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