ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-u.5	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.9	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-e.2	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.4.bio	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.4.hor	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.4.lig	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.4.str	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-m.4.tis	AT5G62150	peptidoglycan-binding LysM domain-containing protein
ath-u.5	AT3G52790	peptidoglycan-binding LysM domain-containing protein
bra-r.6	103854980	uncharacterized LOC103854980
bra-r.6	103837401	uncharacterized LOC103837401
bna-r.1	125602235	uncharacterized LOC125602235
ghi-r.1	107892839	uncharacterized LOC107892839
ghi-r.1	107948467	uncharacterized LOC107948467
ghi-r.1	121228154	uncharacterized LOC121228154
cit-r.1	112499537	uncharacterized LOC112499537
gma-u.5	100500035	uncharacterized LOC100500035
gma-u.5	100500258	uncharacterized LOC100500258
vvi-u.5	100255607	uncharacterized LOC100255607
vvi-u.5	100244252	uncharacterized LOC100244252
ppo-u.5	18101343	uncharacterized LOC18101343
ppo-u.5	7468456	uncharacterized LOC7468456
ppo-u.5	7461739	uncharacterized LOC7461739
mtr-u.5	11427868	uncharacterized LOC11427868
sly-u.5	101263880	uncharacterized LOC101263880
sot-r.1	107061649	uncharacterized LOC107061649
nta-r.1	142168198	uncharacterized LOC142168198
nta-r.1	142178305	uncharacterized LOC142178305
nta-r.1	142179971	uncharacterized LOC142179971
osa-u.5	4349160	uncharacterized LOC4349160
osa-u.5	9271805	uncharacterized LOC9271805
zma-u.5	103637226	peptidoglycan-binding LysM domain-containing protein
zma-u.5	100382217	peptidoglycan-binding LysM domain-containing protein
zma-u.5	100284098	lysM domain containing protein
tae-r.2	123185815	uncharacterized LOC123185815
tae-r.2	123039324	uncharacterized LOC123039324
tae-r.2	123049719	uncharacterized LOC123049719
hvu-r.1	123447428	uncharacterized LOC123447428
hvu-r.1	123410655	uncharacterized LOC123410655
hvu-r.1	123428677	uncharacterized LOC123428677
sbi-r.1	8077983	uncharacterized LOC8077983
sbi-r.1	8063177	uncharacterized LOC8063177
sbi-r.1	8060412	uncharacterized LOC8060412
bdi-r.1	100821016	uncharacterized LOC100821016

Top 50 coexpressed genes to AT5G62150 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G62150 (ath-r.7 coexpression data)

CoexMap"836335"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005739 [list] [network] mitochondrion

(4244 genes)

ISM

GO MF

Protein

NP_201021.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, E.R. 3, extr 2, E.R._vacu 2

(predict for NP_201021.1)

Subcellular
localization
TargetP

scret 8

(predict for NP_201021.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT5G62150	ath-u.5 for AT5G62150	ath-m.9 for AT5G62150	ath-e.2 for AT5G62150	ath-m.4.bio for AT5G62150	ath-m.4.hor for AT5G62150	ath-m.4.lig for AT5G62150	ath-m.4.str for AT5G62150	ath-m.4.tis for AT5G62150	ath-u.5 for AT3G52790	bra-r.6 for 103854980	bra-r.6 for 103837401	bna-r.1 for 125602235	ghi-r.1 for 107892839	ghi-r.1 for 107948467	ghi-r.1 for 121228154	cit-r.1 for 112499537	gma-u.5 for 100500035	gma-u.5 for 100500258	vvi-u.5 for 100255607	vvi-u.5 for 100244252	ppo-u.5 for 18101343	ppo-u.5 for 7468456	ppo-u.5 for 7461739	mtr-u.5 for 11427868	sly-u.5 for 101263880	sot-r.1 for 107061649	nta-r.1 for 142168198	nta-r.1 for 142178305	nta-r.1 for 142179971	osa-u.5 for 4349160	osa-u.5 for 9271805	zma-u.5 for 103637226	zma-u.5 for 100382217	zma-u.5 for 100284098	tae-r.2 for 123185815	tae-r.2 for 123039324	tae-r.2 for 123049719	hvu-r.1 for 123447428	hvu-r.1 for 123410655	hvu-r.1 for 123428677	sbi-r.1 for 8077983	sbi-r.1 for 8063177	sbi-r.1 for 8060412	bdi-r.1 for 100821016

Ortholog

Ortholog ID: 1710

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

peptidoglycan-binding LysM domain-containing protein

uncharacterized LOC103854980

uncharacterized LOC103837401

uncharacterized LOC111210071

uncharacterized LOC125597208

uncharacterized LOC107892839

uncharacterized LOC121211225

uncharacterized LOC107930230

uncharacterized LOC112499537

uncharacterized LOC100500035

uncharacterized LOC100500258

uncharacterized LOC100255607

uncharacterized LOC100244252

uncharacterized LOC18101343

uncharacterized LOC7468456

uncharacterized LOC7461739

uncharacterized LOC11427868

uncharacterized LOC101263880

uncharacterized LOC107061649

uncharacterized LOC142178305

uncharacterized LOC142179971

uncharacterized LOC142180945

uncharacterized LOC4349160

uncharacterized LOC9271805

peptidoglycan-binding LysM domain-containing protein

lysM domain containing protein

uncharacterized LOC123185815

uncharacterized LOC123039324

uncharacterized LOC123126159

uncharacterized LOC123447428

uncharacterized LOC123410655

uncharacterized LOC123428677

uncharacterized LOC8077983

uncharacterized LOC8063177

uncharacterized LOC8060412

uncharacterized LOC100821016

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	2
ath01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00260	Glycine, serine and threonine metabolism	2
bra00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	4
ghi04141	Protein processing in endoplasmic reticulum	4
ghi04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00860	Porphyrin metabolism	2
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00380	Tryptophan metabolism	2
vvi00940	Phenylpropanoid biosynthesis	2
vvi00906	Carotenoid biosynthesis	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00260	Glycine, serine and threonine metabolism	4
ppo01200	Carbon metabolism	4
ppo00630	Glyoxylate and dicarboxylate metabolism	3
ppo00670	One carbon pool by folate	3
ppo00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	4
sly00500	Starch and sucrose metabolism	2
sly00460	Cyanoamino acid metabolism	2
sly00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00500	Starch and sucrose metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00906	Carotenoid biosynthesis	3
tae00402	Benzoxazinoid biosynthesis	2
tae00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3
tae00240	Pyrimidine metabolism	2
tae01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00906	Carotenoid biosynthesis	2
sbi00240	Pyrimidine metabolism	2
sbi01232	Nucleotide metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00230	Purine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00562	Inositol phosphate metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

836335

824445

103854980

103837401

111210071

125597208

107892839

121211225

107930230

112499537

100500035

100500258

100255607

100244252

18101343

7468456

7461739

11427868

101263880

107061649

142178305

142179971

142180945

4349160

9271805

103637226

100382217

100284098

123185815

123039324

123126159

123447428

123410655

123428677

8077983

8063177

8060412

100821016

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	2	1	3	1	2	2	3	1	1	1	3	2	3	3	3	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G62150 (ath-r.7 coexpression data)

Top 50 enrichment test to AT5G62150 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**