ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT5G65760	Serine carboxypeptidase S28 family protein
ath-u.5	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.9	AT5G65760	Serine carboxypeptidase S28 family protein
ath-e.2	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.4.bio	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.4.hor	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.4.lig	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.4.str	AT5G65760	Serine carboxypeptidase S28 family protein
ath-m.4.tis	AT5G65760	Serine carboxypeptidase S28 family protein
ath-u.5	AT2G24280	alpha/beta-Hydrolases superfamily protein
bra-r.6	103874015	lysosomal Pro-X carboxypeptidase
bra-r.6	103864533	lysosomal Pro-X carboxypeptidase
bra-r.6	103852179	lysosomal Pro-X carboxypeptidase
bna-r.1	125608008	lysosomal Pro-X carboxypeptidase-like
bna-r.1	106348095	lysosomal Pro-X carboxypeptidase
bna-r.1	106348183	lysosomal Pro-X carboxypeptidase
ghi-r.1	107950521	lysosomal Pro-X carboxypeptidase
ghi-r.1	107958921	lysosomal Pro-X carboxypeptidase
ghi-r.1	107935273	lysosomal Pro-X carboxypeptidase
cit-r.1	102631380	uncharacterized LOC102631380
cit-r.1	102613309	uncharacterized LOC102613309
gma-u.5	100781698	lysosomal Pro-X carboxypeptidase
gma-u.5	100804985	lysosomal Pro-X carboxypeptidase
vvi-u.5	100252778	uncharacterized LOC100252778
vvi-u.5	100261134	uncharacterized LOC100261134
vvi-u.5	100853380	uncharacterized LOC100853380
ppo-u.5	7492235	uncharacterized LOC7492235
ppo-u.5	7497728	uncharacterized LOC7497728
ppo-u.5	7493410	uncharacterized LOC7493410
mtr-u.5	25499422	lysosomal Pro-X carboxypeptidase
mtr-u.5	25493542	lysosomal Pro-X carboxypeptidase
sly-u.5	101246394	uncharacterized LOC101246394
sly-u.5	101244702	uncharacterized LOC101244702
sly-u.5	101259262	uncharacterized LOC101259262
sot-r.1	102582166	lysosomal Pro-X carboxypeptidase-like
sot-r.1	102586762	lysosomal Pro-X carboxypeptidase-like
sot-r.1	102597170	lysosomal Pro-X carboxypeptidase
nta-r.1	107773352	uncharacterized LOC107773352
nta-r.1	107781733	uncharacterized LOC107781733
nta-r.1	107796184	uncharacterized LOC107796184
osa-u.5	4325498	uncharacterized LOC4325498
osa-u.5	4341667	lysosomal Pro-X carboxypeptidase
zma-u.5	103638817	lysosomal Pro-X carboxypeptidase
zma-u.5	100274448	putative serine peptidase S28 family protein
tae-r.2	123169771	lysosomal Pro-X carboxypeptidase-like
tae-r.2	123172305	lysosomal Pro-X carboxypeptidase
hvu-r.1	123407301	lysosomal Pro-X carboxypeptidase-like
hvu-r.1	123444505	lysosomal Pro-X carboxypeptidase
sbi-r.1	8079258	lysosomal Pro-X carboxypeptidase
sbi-r.1	8069336	lysosomal Pro-X carboxypeptidase
bdi-r.1	100836531	lysosomal Pro-X carboxypeptidase
bdi-r.1	100836646	lysosomal Pro-X carboxypeptidase
cre-r.1	CHLRE_13g567650v5	uncharacterized protein
cre-r.1	CHLRE_10g422150v5	uncharacterized protein

Top 50 coexpressed genes to AT5G65760 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G65760 (ath-r.7 coexpression data)

CoexMap"836705"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0099503 [list] [network] secretory vesicle	(172 genes)	HDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0005829 [list] [network] cytosol	(2593 genes)	RCA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

Protein

NP_201377.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 7, nucl 1, mito 1, plas 1, E.R. 1, nucl_plas 1, E.R._plas 1, mito_plas 1

(predict for NP_201377.2)

Subcellular
localization
TargetP

scret 9, chlo 3

(predict for NP_201377.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT5G65760	ath-u.5 for AT5G65760	ath-m.9 for AT5G65760	ath-e.2 for AT5G65760	ath-m.4.bio for AT5G65760	ath-m.4.hor for AT5G65760	ath-m.4.lig for AT5G65760	ath-m.4.str for AT5G65760	ath-m.4.tis for AT5G65760	ath-u.5 for AT2G24280	bra-r.6 for 103874015	bra-r.6 for 103864533	bra-r.6 for 103852179	bna-r.1 for 125608008	bna-r.1 for 106348095	bna-r.1 for 106348183	ghi-r.1 for 107950521	ghi-r.1 for 107958921	ghi-r.1 for 107935273	cit-r.1 for 102631380	cit-r.1 for 102613309	gma-u.5 for 100781698	gma-u.5 for 100804985	vvi-u.5 for 100252778	vvi-u.5 for 100261134	vvi-u.5 for 100853380	ppo-u.5 for 7492235	ppo-u.5 for 7497728	ppo-u.5 for 7493410	mtr-u.5 for 25499422	mtr-u.5 for 25493542	sly-u.5 for 101246394	sly-u.5 for 101244702	sly-u.5 for 101259262	sot-r.1 for 102582166	sot-r.1 for 102586762	sot-r.1 for 102597170	nta-r.1 for 107773352	nta-r.1 for 107781733	nta-r.1 for 107796184	osa-u.5 for 4325498	osa-u.5 for 4341667	zma-u.5 for 103638817	zma-u.5 for 100274448	tae-r.2 for 123169771	tae-r.2 for 123172305	hvu-r.1 for 123407301	hvu-r.1 for 123444505	sbi-r.1 for 8079258	sbi-r.1 for 8069336	bdi-r.1 for 100836531	bdi-r.1 for 100836646	cre-r.1 for CHLRE_13g567650v5	cre-r.1 for CHLRE_10g422150v5

Ortholog

Ortholog ID: 1194

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Serine carboxypeptidase S28 family protein

alpha/beta-Hydrolases superfamily protein

lysosomal Pro-X carboxypeptidase

lysosomal Pro-X carboxypeptidase-like

lysosomal Pro-X carboxypeptidase

uncharacterized LOC102631380

uncharacterized LOC102613309

lysosomal Pro-X carboxypeptidase

uncharacterized LOC100252778

uncharacterized LOC100261134

uncharacterized LOC100853380

uncharacterized LOC7492235

uncharacterized LOC7497728

uncharacterized LOC7493410

lysosomal Pro-X carboxypeptidase

uncharacterized LOC101246394

uncharacterized LOC101244702

uncharacterized LOC101259262

lysosomal Pro-X carboxypeptidase-like

lysosomal Pro-X carboxypeptidase

uncharacterized LOC107773352

uncharacterized LOC107781733

uncharacterized LOC107796017

uncharacterized LOC4325498

lysosomal Pro-X carboxypeptidase

putative serine peptidase S28 family protein

lysosomal Pro-X carboxypeptidase

lysosomal Pro-X carboxypeptidase-like

lysosomal Pro-X carboxypeptidase

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	3
ath00270	Cysteine and methionine metabolism	2
ath00260	Glycine, serine and threonine metabolism	2
ath00280	Valine, leucine and isoleucine degradation	2
ath00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00220	Arginine biosynthesis	2
bra01210	2-Oxocarboxylic acid metabolism	2
bra01230	Biosynthesis of amino acids	2
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00220	Arginine biosynthesis	4
bna01210	2-Oxocarboxylic acid metabolism	4
bna01230	Biosynthesis of amino acids	4
bna00062	Fatty acid elongation	2
bna01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	3
gma01200	Carbon metabolism	3
gma00051	Fructose and mannose metabolism	2
gma00052	Galactose metabolism	2
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	5
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	4
vvi00860	Porphyrin metabolism	3
vvi00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo03015	mRNA surveillance pathway	2
ppo04136	Autophagy - other	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr02010	ABC transporters	2
mtr04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03440	Homologous recombination	2
sot03450	Non-homologous end-joining	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00052	Galactose metabolism	2
nta00500	Starch and sucrose metabolism	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta00030	Pentose phosphate pathway	2
nta00480	Glutathione metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta04075	Plant hormone signal transduction	2
nta00030	Pentose phosphate pathway	2
nta00480	Glutathione metabolism	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	3
osa00350	Tyrosine metabolism	2
osa00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	5
sbi01200	Carbon metabolism	2
sbi01230	Biosynthesis of amino acids	2
sbi00071	Fatty acid degradation	2
sbi00350	Tyrosine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	4
sbi01230	Biosynthesis of amino acids	4
sbi00010	Glycolysis / Gluconeogenesis	3
sbi03018	RNA degradation	2
sbi04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01240	Biosynthesis of cofactors	2
bdi00670	One carbon pool by folate	2

Expression

Expression pattern

Entrez Gene ID^*

836705

816963

103874015

103864533

103852179

125608008

106348095

106446636

107935273

107928126

107925523

102631380

102613309

100781698

100804985

100252778

100261134

100853380

7492235

7497728

7493410

25499422

25493542

101246394

101244702

101259262

102582166

102586762

102597170

107773352

107781733

107796017

4325498

4341667

103638817

100274448

123163952

123407301

123444505

8079258

8058418

100836531

100836646

5719076

5728251

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	2	2	3	3	2	3	3	3	2	2	2	2	2	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G65760 (ath-r.7 coexpression data)

Top 50 enrichment test to AT5G65760 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**