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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   NPQ1   non-photochemical quenching 1 
 ath-u.5   NPQ1   non-photochemical quenching 1 
 ath-m.9   NPQ1   non-photochemical quenching 1 
 ath-e.2   NPQ1   non-photochemical quenching 1 
 ath-m.4.bio   NPQ1   non-photochemical quenching 1 
 ath-m.4.hor   NPQ1   non-photochemical quenching 1 
 ath-m.4.lig   NPQ1   non-photochemical quenching 1 
 ath-m.4.str   NPQ1   non-photochemical quenching 1 
 ath-m.4.tis   NPQ1   non-photochemical quenching 1 
 bra-r.6   103871599   violaxanthin de-epoxidase, chloroplastic 
 bna-r.1   106346323   violaxanthin de-epoxidase, chloroplastic 
 bna-r.1   106415200   violaxanthin de-epoxidase, chloroplastic-like 
 ghi-r.1   107961898   violaxanthin de-epoxidase, chloroplastic 
 ghi-r.1   107892463   violaxanthin de-epoxidase, chloroplastic 
 cit-r.1   VDE   violaxanthin de-epoxidase 
 gma-u.5   100816085   violaxanthin de-epoxidase, chloroplastic-like 
 gma-u.5   100778118   violaxanthin de-epoxidase, chloroplastic-like 
 vvi-u.5   100257865   violaxanthin de-epoxidase, chloroplastic 
 ppo-u.5   7474648   violaxanthin de-epoxidase, chloroplastic 
 mtr-u.5   11429816   violaxanthin de-epoxidase, chloroplastic 
 sly-u.5   VDE   violaxanthin de-epoxidase 
 sot-r.1   102588520   violaxanthin de-epoxidase, chloroplastic 
 nta-r.1   107763628   violaxanthin de-epoxidase, chloroplastic 
 nta-r.1   107780507   violaxanthin de-epoxidase, chloroplastic-like 
 osa-u.5   4335625   violaxanthin de-epoxidase, chloroplastic 
 zma-u.5   100281366   violaxanthin de-epoxidase 
 tae-r.2   123189027   violaxanthin de-epoxidase, chloroplastic 
 tae-r.2   123053120   violaxanthin de-epoxidase, chloroplastic 
 tae-r.2   542859   violaxanthin de-epoxidase, chloroplastic 
 hvu-r.1   123426505   violaxanthin de-epoxidase, chloroplastic 
 sbi-r.1   8070802   violaxanthin de-epoxidase, chloroplastic 
 bdi-r.1   100829969   violaxanthin de-epoxidase, chloroplastic 

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Top 50 coexpressed genes to NPQ1 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NPQ1 (ath-r.7 coexpression data)

CoexMap"837377"


athNPQ1 | Entrez gene ID : 837377      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:0010028 [list] [network] xanthophyll cycle  (3 genes)  IMP  
GO:0016122 [list] [network] xanthophyll metabolic process  (15 genes)  TAS  
GO:0015994 [list] [network] chlorophyll metabolic process  (47 genes)  IGI  
GO:0006631 [list] [network] fatty acid metabolic process  (185 genes)  IGI  
GO:0009408 [list] [network] response to heat  (271 genes)  IMP  
GO CC
GO:0030095 [list] [network] chloroplast photosystem II  (1 genes)  TAS  
GO:0009543 [list] [network] chloroplast thylakoid lumen  (52 genes)  HDA  
GO:0031977 [list] [network] thylakoid lumen  (69 genes)  HDA  
GO:0009534 [list] [network] chloroplast thylakoid  (417 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0046422 [list] [network] violaxanthin de-epoxidase activity  (2 genes)  IMP  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001031000.1 [sequence] [blastp]
NP_001321301.1 [sequence] [blastp]
NP_172331.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  cyto_nucl 3,  nucl 1  (predict for NP_001031000.1)
cyto 4,  chlo 4,  cyto_nucl 3,  nucl 1  (predict for NP_001321301.1)
cyto 4,  chlo 4,  cyto_nucl 3,  nucl 1  (predict for NP_172331.1)
Subcellular
localization
TargetP
other 5,  chlo 5  (predict for NP_001031000.1)
other 5,  chlo 5  (predict for NP_001321301.1)
other 5,  chlo 5  (predict for NP_172331.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
NPQ1
ath-u.5
for
NPQ1
ath-m.9
for
NPQ1
ath-e.2
for
NPQ1
ath-m.4.bio
for
NPQ1
ath-m.4.hor
for
NPQ1
ath-m.4.lig
for
NPQ1
ath-m.4.str
for
NPQ1
ath-m.4.tis
for
NPQ1
bra-r.6
for
103871599
bna-r.1
for
106346323
bna-r.1
for
106415200
ghi-r.1
for
107961898
ghi-r.1
for
107892463
cit-r.1
for
VDE
gma-u.5
for
100816085
gma-u.5
for
100778118
vvi-u.5
for
100257865
ppo-u.5
for
7474648
mtr-u.5
for
11429816
sly-u.5
for
VDE
sot-r.1
for
102588520
nta-r.1
for
107763628
nta-r.1
for
107780507
osa-u.5
for
4335625
zma-u.5
for
100281366
tae-r.2
for
123189027
tae-r.2
for
123053120
tae-r.2
for
542859
hvu-r.1
for
123426505
sbi-r.1
for
8070802
bdi-r.1
for
100829969


Ortholog ID: 11036
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol NPQ1 LOC103871599 LOC106346323 LOC106415200 LOC107961898 LOC107892463 VDE LOC100816085 LOC100778118 LOC100257865 LOC7474648 LOC11429816 VDE LOC102588520 LOC107763628 LOC107780507 LOC4335625 LOC100281366 LOC123189027 LOC123053120 LOC542859 LOC123426505 LOC8070802 LOC100829969
Function* non-photochemical quenching 1 violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic-like violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic violaxanthin de-epoxidase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 2
bna00030 Pentose phosphate pathway 2
bna00480 Glutathione metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
ghi00260 Glycine, serine and threonine metabolism 2
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00670 One carbon pool by folate 2
ghi00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 4
ghi00030 Pentose phosphate pathway 2
ghi00040 Pentose and glucuronate interconversions 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 4
gma00195 Photosynthesis 3
gma00710 Carbon fixation by Calvin cycle 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 2
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01230 Biosynthesis of amino acids 2
ppo00710 Carbon fixation by Calvin cycle 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 4
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
zma00900 Terpenoid backbone biosynthesis 2
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 5
tae01200 Carbon metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 4
tae01200 Carbon metabolism 4
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837377 103871599 106346323 106415200 107961898 107892463 102577994 100816085 100778118 100257865 7474648 11429816 543696 102588520 107763628 107780507 4335625 100281366 123189027 123053120 542859 123426505 8070802 100829969
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