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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   TAF13   TBP-associated factor 13 
 ath-u.5   TAF13   TBP-associated factor 13 
 ath-m.9   TAF13   TBP-associated factor 13 
 ath-e.2   TAF13   TBP-associated factor 13 
 ath-m.4.bio   TAF13   TBP-associated factor 13 
 ath-m.4.hor   TAF13   TBP-associated factor 13 
 ath-m.4.lig   TAF13   TBP-associated factor 13 
 ath-m.4.str   TAF13   TBP-associated factor 13 
 ath-m.4.tis   TAF13   TBP-associated factor 13 
 bra-r.6   103836646   transcription initiation factor TFIID subunit 13 
 bra-r.6   103844568   transcription initiation factor TFIID subunit 13 
 bna-r.1   106386154   transcription initiation factor TFIID subunit 13 
 bna-r.1   106399399   transcription initiation factor TFIID subunit 13 
 bna-r.1   106401839   transcription initiation factor TFIID subunit 13 
 ghi-r.1   107914225   transcription initiation factor TFIID subunit 13 
 ghi-r.1   107926408   transcription initiation factor TFIID subunit 13 
 cit-r.1   102607810   transcription initiation factor TFIID subunit 13-like 
 cit-r.1   102628248   transcription initiation factor TFIID subunit 13 
 gma-u.5   100789657   transcription initiation factor TFIID subunit 13 
 gma-u.5   100796504   transcription initiation factor TFIID subunit 13-like 
 gma-u.5   100786463   transcription initiation factor TFIID subunit 13-like 
 vvi-u.5   100246965   transcription initiation factor TFIID subunit 13 
 ppo-u.5   7495223   transcription initiation factor TFIID subunit 13 
 mtr-u.5   11427653   transcription initiation factor TFIID subunit 13 
 sly-u.5   101248069   transcription initiation factor TFIID subunit 13 
 sly-u.5   101247489   transcription initiation factor TFIID subunit 13 
 sot-r.1   102594323   transcription initiation factor TFIID subunit 13-like 
 sot-r.1   102583468   transcription initiation factor TFIID subunit 13-like 
 nta-r.1   107829799   transcription initiation factor TFIID subunit 13 
 nta-r.1   107771623   transcription initiation factor TFIID subunit 13 
 osa-u.5   9268703   transcription initiation factor TFIID subunit 13 
 zma-u.5   100282526   uncharacterized LOC100282526 
 tae-r.2   123120356   transcription initiation factor TFIID subunit 13 
 tae-r.2   123180620   transcription initiation factor TFIID subunit 13 
 tae-r.2   123113939   transcription initiation factor TFIID subunit 13 
 hvu-r.1   123426387   transcription initiation factor TFIID subunit 13 
 sbi-r.1   8086326   transcription initiation factor TFIID subunit 13 
 bdi-r.1   100824647   transcription initiation protein SPT3 homolog 
 cre-r.1   CHLRE_04g222100v5   uncharacterized protein 

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Top 50 coexpressed genes to TAF13 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to TAF13 (ath-r.7 coexpression data)

CoexMap"837962"


athTAF13 | Entrez gene ID : 837962      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 2 3 1 1 1 2 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0009960 [list] [network] endosperm development  (35 genes)  IMP  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (569 genes)  IMP  
GO:0048316 [list] [network] seed development  (775 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0046982 [list] [network] protein heterodimerization activity  (86 genes)  IEA  
Protein NP_171768.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 4,  nucl_plas 4  (predict for NP_171768.2)
Subcellular
localization
TargetP
chlo 5  (predict for NP_171768.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
TAF13
ath-u.5
for
TAF13
ath-m.9
for
TAF13
ath-e.2
for
TAF13
ath-m.4.bio
for
TAF13
ath-m.4.hor
for
TAF13
ath-m.4.lig
for
TAF13
ath-m.4.str
for
TAF13
ath-m.4.tis
for
TAF13
bra-r.6
for
103836646
bra-r.6
for
103844568
bna-r.1
for
106386154
bna-r.1
for
106399399
bna-r.1
for
106401839
ghi-r.1
for
107914225
ghi-r.1
for
107926408
cit-r.1
for
102607810
cit-r.1
for
102628248
gma-u.5
for
100789657
gma-u.5
for
100796504
gma-u.5
for
100786463
vvi-u.5
for
100246965
ppo-u.5
for
7495223
mtr-u.5
for
11427653
sly-u.5
for
101248069
sly-u.5
for
101247489
sot-r.1
for
102594323
sot-r.1
for
102583468
nta-r.1
for
107829799
nta-r.1
for
107771623
osa-u.5
for
9268703
zma-u.5
for
100282526
tae-r.2
for
123120356
tae-r.2
for
123180620
tae-r.2
for
123113939
hvu-r.1
for
123426387
sbi-r.1
for
8086326
bdi-r.1
for
100824647
cre-r.1
for
CHLRE_04g222100v5


Ortholog ID: 5883
Species ath bra bra bna bna bna ghi ghi cit cit gma gma gma vvi ppo mtr sly sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol TAF13 LOC103836646 LOC103844568 LOC106399399 LOC106401839 LOC106422944 LOC107926408 LOC107897557 LOC102607810 LOC102628248 LOC100789657 LOC100796504 LOC100786463 LOC100246965 LOC7495223 LOC11427653 LOC101248069 LOC101247489 LOC102594323 LOC102583468 LOC107829799 LOC107771623 LOC9268703 LOC100282526 LOC123180620 LOC123113939 LOC123103185 LOC123426387 LOC8086326 LOC100824647 CHLRE_04g222100v5
Function* TBP-associated factor 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13-like transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 uncharacterized LOC100282526 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation factor TFIID subunit 13 transcription initiation protein SPT3 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 4
bna04122 Sulfur relay system 2
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi03018 RNA degradation 3
ghi04142 Lysosome 2
ghi03022 Basal transcription factors 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 4
cit04136 Autophagy - other 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 3
cit03022 Basal transcription factors 3
cit04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03022 Basal transcription factors 3
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03022 Basal transcription factors 3
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi03010 Ribosome 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 7
sot03008 Ribosome biogenesis in eukaryotes 2
sot03083 Polycomb repressive complex 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03010 Ribosome 3
nta03022 Basal transcription factors 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04130 SNARE interactions in vesicular transport 4
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma04130 SNARE interactions in vesicular transport 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00900 Terpenoid backbone biosynthesis 5
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00270 Cysteine and methionine metabolism 2
tae04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00510 N-Glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03022 Basal transcription factors 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837962 103836646 103844568 106399399 106401839 106422944 107926408 107897557 102607810 102628248 100789657 100796504 100786463 100246965 7495223 11427653 101248069 101247489 102594323 102583468 107829799 107771623 9268703 100282526 123180620 123113939 123103185 123426387 8086326 100824647 5717760
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