ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-m.9	KNAT6	homeobox protein knotted-1-like 6
ath-e.2	KNAT6	homeobox protein knotted-1-like 6
ath-m.4.bio	KNAT6	homeobox protein knotted-1-like 6
ath-m.4.hor	KNAT6	homeobox protein knotted-1-like 6
ath-m.4.lig	KNAT6	homeobox protein knotted-1-like 6
ath-m.4.str	KNAT6	homeobox protein knotted-1-like 6
ath-m.4.tis	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	STM	KNOX/ELK homeobox transcription factor
ath-u.5	KNAT2	homeobox knotted-like protein
ath-u.5	KNAT1	homeobox knotted-like protein
bra-r.6	103858468	homeobox protein knotted-1-like 1
bra-r.6	103852657	homeobox protein knotted-1-like 2
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
bna-r.1	106414253	homeobox protein knotted-1-like 6
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
ghi-r.1	107930537	homeobox protein knotted-1-like 2
cit-r.1	102615394	homeotic protein knotted-1
cit-r.1	102628261	homeobox protein knotted-1-like 6
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100786114	homeobox protein knotted-1-like 10
vvi-u.5	100267474	homeobox protein SBH1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
ppo-u.5	7478899	homeobox protein knotted-1-like 1
ppo-u.5	7467239	homeobox protein knotted-1-like 2
ppo-u.5	7463625	homeobox protein SBH1
mtr-u.5	25482021	homeotic protein knotted-1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
mtr-u.5	11415594	homeobox protein knotted-1-like 6
sly-u.5	KN4	knotted homeodomain protein 4
sly-u.5	T6	class I knotted-like homeodomain protein
sly-u.5	KN1	homeotic protein knotted-1
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102577616	POTH1
nta-r.1	107780680	homeobox protein knotted-1-like 6
nta-r.1	107826559	homeobox protein knotted-1-like LET6
osa-u.5	4342320	homeobox protein knotted-1-like 12
zma-u.5	100193050	uncharacterized LOC100193050
zma-u.5	100283504	KNOX1 domain containing protein
zma-u.5	100283277	homeobox protein rough sheath 1
tae-r.2	123090945	homeobox protein KNOX3
hvu-r.1	123447644	homeobox protein KNOX3
sbi-r.1	8060322	homeobox protein knotted-1-like 1
sbi-r.1	8084184	homeobox protein rough sheath 1
sbi-r.1	8071273	homeobox protein knotted-1-like 10
bdi-r.1	100821336	homeobox protein knotted-1-like 12
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1

Top 50 coexpressed genes to KNAT6 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to KNAT6 (ath-r.7 coexpression data)

CoexMap"838946"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010073 [list] [network] meristem maintenance

(197 genes)

IGI

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

IDA ISM

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(47 genes)	IEA
GO:0000976 [list] [network] transcription cis-regulatory region binding	(716 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1620 genes)	ISS
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_173752.3 [sequence] [blastp]
NP_850951.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_173752.3)
nucl 9	(predict for NP_850951.2)

Subcellular
localization
TargetP

other 8	(predict for NP_173752.3)
other 8	(predict for NP_850951.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for KNAT6	ath-u.5 for KNAT6	ath-m.9 for KNAT6	ath-e.2 for KNAT6	ath-m.4.bio for KNAT6	ath-m.4.hor for KNAT6	ath-m.4.lig for KNAT6	ath-m.4.str for KNAT6	ath-m.4.tis for KNAT6	ath-u.5 for STM	ath-u.5 for KNAT2	ath-u.5 for KNAT1	bra-r.6 for 103858468	bra-r.6 for 103852657	bra-r.6 for STM	bna-r.1 for 106414253	bna-r.1 for 106420956	bna-r.1 for 106434220	ghi-r.1 for 107935395	ghi-r.1 for 107933765	ghi-r.1 for 107930537	cit-r.1 for 102615394	cit-r.1 for 102628261	gma-u.5 for 100803730	gma-u.5 for 100786114	vvi-u.5 for 100267474	vvi-u.5 for 100264808	ppo-u.5 for 7478899	ppo-u.5 for 7467239	ppo-u.5 for 7463625	mtr-u.5 for 25482021	mtr-u.5 for 11406488	mtr-u.5 for 11415594	sly-u.5 for KN4	sly-u.5 for T6	sly-u.5 for KN1	sot-r.1 for POTH15	sot-r.1 for 102579398	sot-r.1 for 102577616	nta-r.1 for 107780680	nta-r.1 for 107826559	osa-u.5 for 4342320	zma-u.5 for 100193050	zma-u.5 for 100283504	zma-u.5 for 100283277	tae-r.2 for 123090945	hvu-r.1 for 123447644	sbi-r.1 for 8060322	sbi-r.1 for 8084184	sbi-r.1 for 8071273	bdi-r.1 for 100821336	bdi-r.1 for 100830103	bdi-r.1 for 100832589

Ortholog

Ortholog ID: 275

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

sbi

bdi

Symbol

KNAT6

STM

KNAT2

KN1

TKn3

POTH15

Function^*

homeobox protein knotted-1-like 6

KNOX/ELK homeobox transcription factor

homeobox knotted-like protein

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein SBH1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like LET6

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

class I knotted-like homeodomain protein

homeotic protein knotted-1

knotted 3 protein

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 12

homeobox protein knotted-1-like 10

liguleless 3

knotted related homeobox 5

liguleless 4

homeobox protein KNOX3

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 7

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

838946

842534

843388

103858468

103852657

103835665

106404904

125600843

107924993

107938311

107895047

102615394

102609444

102614106

100786454

100800822

100803095

100255834

100248152

7478899

112327500

25482021

11406488

11415594

543520

544007

544029

102581859

102601860

107817797

107781949

4342320

4337701

542487

541961

541960

123090945

123180294

123180293

8071273

8059916

8059967

100832589

100839205

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	2	2	2	3	3	3	3	2	1	3	1	1	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to KNAT6 (ath-r.7 coexpression data)

Top 50 enrichment test to KNAT6 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**