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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-r.7   AT1G60230   Radical SAM superfamily protein 
 ath-u.5   AT1G60230   Radical SAM superfamily protein 
 ath-m.9   AT1G60230   Radical SAM superfamily protein 
 ath-e.2   AT1G60230   Radical SAM superfamily protein 
 ath-m.4.bio   AT1G60230   Radical SAM superfamily protein 
 ath-m.4.hor   AT1G60230   Radical SAM superfamily protein 
 ath-m.4.lig   AT1G60230   Radical SAM superfamily protein 
 ath-m.4.str   AT1G60230   Radical SAM superfamily protein 
 ath-m.4.tis   AT1G60230   Radical SAM superfamily protein 
 bra-r.6   103838515   dual-specificity RNA methyltransferase RlmN 
 bna-r.1   106429128   dual-specificity RNA methyltransferase RlmN 
 bna-r.1   106381969   dual-specificity RNA methyltransferase RlmN 
 ghi-r.1   121210963   dual-specificity RNA methyltransferase RlmN 
 ghi-r.1   107946221   dual-specificity RNA methyltransferase RlmN 
 cit-r.1   102610918   uncharacterized LOC102610918 
 gma-u.5   100813692   dual-specificity RNA methyltransferase RlmN 
 vvi-u.5   104880034   uncharacterized LOC104880034 
 ppo-u.5   7492401   uncharacterized LOC7492401 
 mtr-u.5   25501332   dual-specificity RNA methyltransferase RlmN 
 sly-u.5   104647251   uncharacterized LOC104647251 
 sot-r.1   102600124   dual-specificity RNA methyltransferase RlmN 
 nta-r.1   107771778   uncharacterized LOC107771778 
 nta-r.1   107824768   uncharacterized LOC107824768 
 osa-u.5   4326553   uncharacterized LOC4326553 
 zma-u.5   100273119   uncharacterized LOC100273119 
 tae-r.2   123070205   dual-specificity RNA methyltransferase RlmN 
 tae-r.2   123078643   dual-specificity RNA methyltransferase RlmN 
 tae-r.2   123061572   dual-specificity RNA methyltransferase RlmN 
 hvu-r.1   123443954   dual-specificity RNA methyltransferase RlmN 
 sbi-r.1   8054938   dual-specificity RNA methyltransferase RlmN 
 bdi-r.1   100823265   dual-specificity RNA methyltransferase RlmN 
 cre-r.1   CHLRE_02g109250v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G60230 (ath-r.7 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G60230 (ath-r.7 coexpression data)

CoexMap"842318"


athAT1G60230 | Entrez gene ID : 842318      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030488 [list] [network] tRNA methylation  (9 genes)  IEA  
GO:0070475 [list] [network] rRNA base methylation  (10 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0008173 [list] [network] RNA methyltransferase activity  (43 genes)  IEA  
Protein NP_564755.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for NP_564755.1)
Subcellular
localization
TargetP
chlo 2  (predict for NP_564755.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-r.7
for
AT1G60230
ath-u.5
for
AT1G60230
ath-m.9
for
AT1G60230
ath-e.2
for
AT1G60230
ath-m.4.bio
for
AT1G60230
ath-m.4.hor
for
AT1G60230
ath-m.4.lig
for
AT1G60230
ath-m.4.str
for
AT1G60230
ath-m.4.tis
for
AT1G60230
bra-r.6
for
103838515
bna-r.1
for
106429128
bna-r.1
for
106381969
ghi-r.1
for
121210963
ghi-r.1
for
107946221
cit-r.1
for
102610918
gma-u.5
for
100813692
vvi-u.5
for
104880034
ppo-u.5
for
7492401
mtr-u.5
for
25501332
sly-u.5
for
104647251
sot-r.1
for
102600124
nta-r.1
for
107771778
nta-r.1
for
107824768
osa-u.5
for
4326553
zma-u.5
for
100273119
tae-r.2
for
123070205
tae-r.2
for
123078643
tae-r.2
for
123061572
hvu-r.1
for
123443954
sbi-r.1
for
8054938
bdi-r.1
for
100823265
cre-r.1
for
CHLRE_02g109250v5


Ortholog ID: 11099
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G60230 LOC103838515 LOC106429128 LOC106381969 LOC121210963 LOC107946221 LOC102610918 LOC100813692 LOC104880034 LOC7492401 LOC25501332 LOC104647251 LOC102600124 LOC107771778 LOC107824768 LOC4326553 LOC100273119 LOC123070205 LOC123078643 LOC123061572 LOC123443954 LOC8054938 LOC100823265 CHLRE_02g109250v5
Function* Radical SAM superfamily protein dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN uncharacterized LOC102610918 dual-specificity RNA methyltransferase RlmN uncharacterized LOC104880034 uncharacterized LOC7492401 dual-specificity RNA methyltransferase RlmN uncharacterized LOC104647251 dual-specificity RNA methyltransferase RlmN uncharacterized LOC107771778 uncharacterized LOC107824768 uncharacterized LOC4326553 uncharacterized LOC100273119 dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN dual-specificity RNA methyltransferase RlmN uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 4
ath00290 Valine, leucine and isoleucine biosynthesis 2
ath00620 Pyruvate metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
bna01240 Biosynthesis of cofactors 4
bna00860 Porphyrin metabolism 4
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00760 Nicotinate and nicotinamide metabolism 2
gma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 4
vvi00230 Purine metabolism 2
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00620 Pyruvate metabolism 2
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo00906 Carotenoid biosynthesis 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly00970 Aminoacyl-tRNA biosynthesis 2
sly04626 Plant-pathogen interaction 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00340 Histidine metabolism 4
nta01230 Biosynthesis of amino acids 4
nta00970 Aminoacyl-tRNA biosynthesis 2
nta04146 Peroxisome 2
nta03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 4
nta04146 Peroxisome 2
nta00860 Porphyrin metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842318 103838515 106429128 106381969 121210963 107946221 102610918 100813692 104880034 7492401 25501332 104647251 102600124 107771778 107824768 4326553 100273119 123070205 123078643 123061572 123443954 8054938 100823265 5725265
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