ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-r.7	AT1G72140	Major facilitator superfamily protein
ath-u.5	AT1G72140	Major facilitator superfamily protein
ath-m.9	AT1G72140	Major facilitator superfamily protein
ath-e.2	AT1G72140	Major facilitator superfamily protein
ath-m.4.bio	AT1G72140	Major facilitator superfamily protein
ath-m.4.hor	AT1G72140	Major facilitator superfamily protein
ath-m.4.lig	AT1G72140	Major facilitator superfamily protein
ath-m.4.str	AT1G72140	Major facilitator superfamily protein
ath-m.4.tis	AT1G72140	Major facilitator superfamily protein
ath-u.5	AT1G22540	Major facilitator superfamily protein
ath-u.5	AT1G22550	Major facilitator superfamily protein
ath-u.5	AT1G72120	Major facilitator superfamily protein
bra-r.6	103852757	protein NRT1/ PTR FAMILY 5.12
bna-r.1	111204477	protein NRT1/ PTR FAMILY 5.14-like
bna-r.1	106368397	protein NRT1/ PTR FAMILY 5.16
bna-r.1	106369468	protein NRT1/ PTR FAMILY 5.12-like
ghi-r.1	107910620	protein NRT1/ PTR FAMILY 5.10
ghi-r.1	107895068	protein NRT1/ PTR FAMILY 5.10
ghi-r.1	107957496	protein NRT1/ PTR FAMILY 5.10
cit-r.1	102615398	protein NRT1/ PTR FAMILY 5.10
cit-r.1	102615123	protein NRT1/ PTR FAMILY 5.10-like
gma-u.5	100782611	protein NRT1/ PTR FAMILY 5.10
gma-u.5	100776720	protein NRT1/ PTR FAMILY 5.10
vvi-u.5	100254556	protein NRT1/ PTR FAMILY 5.10
vvi-u.5	104882761	protein NRT1/ PTR FAMILY 5.10
ppo-u.5	112326053	protein NRT1/ PTR FAMILY 5.10
ppo-u.5	112325216	protein NRT1/ PTR FAMILY 5.10-like
mtr-u.5	25480837	protein NRT1/ PTR FAMILY 5.10
mtr-u.5	25491797	protein NRT1/ PTR FAMILY 5.10
mtr-u.5	25491799	protein NRT1/ PTR FAMILY 5.10
sly-u.5	101256981	protein NRT1/ PTR FAMILY 5.10
sot-r.1	102597245	protein NRT1/ PTR FAMILY 5.10-like
nta-r.1	107785416	protein NRT1/ PTR FAMILY 5.10
nta-r.1	107780079	protein NRT1/ PTR FAMILY 5.10-like
nta-r.1	107811431	protein NRT1/ PTR FAMILY 5.10
osa-u.5	112937603	protein NRT1/ PTR FAMILY 5.10
osa-u.5	9270493	protein NRT1/ PTR FAMILY 5.10
osa-u.5	112935994	protein NRT1/ PTR FAMILY 5.10
zma-u.5	100382172	Protein NRT1/ PTR FAMILY 5.10
zma-u.5	100383726	uncharacterized LOC100383726
zma-u.5	100502313	uncharacterized LOC100502313
tae-r.2	123062751	protein NRT1/ PTR FAMILY 5.10
tae-r.2	123062749	protein NRT1/ PTR FAMILY 5.10
tae-r.2	123062748	protein NRT1/ PTR FAMILY 5.10
hvu-r.1	123444771	protein NRT1/ PTR FAMILY 5.10-like
hvu-r.1	123440453	protein NRT1/ PTR FAMILY 5.10-like
sbi-r.1	8060993	protein NRT1/ PTR FAMILY 5.10
sbi-r.1	8062441	protein NRT1/ PTR FAMILY 5.10
sbi-r.1	8055194	protein NRT1/ PTR FAMILY 5.10
bdi-r.1	112270659	protein NRT1/ PTR FAMILY 5.16-like
bdi-r.1	106866091	protein NRT1/ PTR FAMILY 5.10
bdi-r.1	100841432	protein NRT1/ PTR FAMILY 5.10-like

Top 50 coexpressed genes to AT1G72140 (ath-r.7 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT1G72140 (ath-r.7 coexpression data)

CoexMap"843545"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0015706 [list] [network] nitrate transmembrane transport	(22 genes)	IDA
GO:0009624 [list] [network] response to nematode	(90 genes)	HEP

GO CC

GO:0009705 [list] [network] plant-type vacuole membrane	(117 genes)	IDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0080054 [list] [network] low-affinity nitrate transmembrane transporter activity	(7 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_177359.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, chlo 1, nucl 1, vacu 1, E.R. 1, cyto_nucl 1, chlo_mito 1, cysk_nucl 1, E.R._vacu 1

(predict for NP_177359.1)

Subcellular
localization
TargetP

other 8

(predict for NP_177359.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-r.7 for AT1G72140	ath-u.5 for AT1G72140	ath-m.9 for AT1G72140	ath-e.2 for AT1G72140	ath-m.4.bio for AT1G72140	ath-m.4.hor for AT1G72140	ath-m.4.lig for AT1G72140	ath-m.4.str for AT1G72140	ath-m.4.tis for AT1G72140	ath-u.5 for AT1G22540	ath-u.5 for AT1G22550	ath-u.5 for AT1G72120	bra-r.6 for 103852757	bna-r.1 for 111204477	bna-r.1 for 106368397	bna-r.1 for 106369468	ghi-r.1 for 107910620	ghi-r.1 for 107895068	ghi-r.1 for 107957496	cit-r.1 for 102615398	cit-r.1 for 102615123	gma-u.5 for 100782611	gma-u.5 for 100776720	vvi-u.5 for 100254556	vvi-u.5 for 104882761	ppo-u.5 for 112326053	ppo-u.5 for 112325216	mtr-u.5 for 25480837	mtr-u.5 for 25491797	mtr-u.5 for 25491799	sly-u.5 for 101256981	sot-r.1 for 102597245	nta-r.1 for 107785416	nta-r.1 for 107780079	nta-r.1 for 107811431	osa-u.5 for 112937603	osa-u.5 for 9270493	osa-u.5 for 112935994	zma-u.5 for 100382172	zma-u.5 for 100383726	zma-u.5 for 100502313	tae-r.2 for 123062751	tae-r.2 for 123062749	tae-r.2 for 123062748	hvu-r.1 for 123444771	hvu-r.1 for 123440453	sbi-r.1 for 8060993	sbi-r.1 for 8062441	sbi-r.1 for 8055194	bdi-r.1 for 112270659	bdi-r.1 for 106866091	bdi-r.1 for 100841432

Ortholog

Ortholog ID: 645

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Major facilitator superfamily protein

protein NRT1/ PTR FAMILY 5.11

protein NRT1/ PTR FAMILY 5.16

protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.10-like

protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.10-like

protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.10-like

protein NRT1/ PTR FAMILY 5.10

uncharacterized LOC100502313

Protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.10-like

protein NRT1/ PTR FAMILY 5.10

protein NRT1/ PTR FAMILY 5.16-like

protein NRT1/ PTR FAMILY 5.10

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	5
bna03015	mRNA surveillance pathway	2
bna00100	Steroid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	9
gma00510	N-Glycan biosynthesis	5
gma00513	Various types of N-glycan biosynthesis	5
gma04145	Phagosome	2
gma04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00010	Glycolysis / Gluconeogenesis	2
vvi01200	Carbon metabolism	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	3
mtr00240	Pyrimidine metabolism	2
mtr00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta04136	Autophagy - other	2
nta04075	Plant hormone signal transduction	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta02010	ABC transporters	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	2
nta00071	Fatty acid degradation	2
nta00350	Tyrosine metabolism	2
nta00620	Pyruvate metabolism	2
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00270	Cysteine and methionine metabolism	2
osa00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04712	Circadian rhythm - plant	3
tae00562	Inositol phosphate metabolism	2
tae00564	Glycerophospholipid metabolism	2
tae00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04814	Motor proteins	3
tae02010	ABC transporters	2
tae04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00062	Fatty acid elongation	6
sbi04626	Plant-pathogen interaction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00260	Glycine, serine and threonine metabolism	2
bdi00310	Lysine degradation	2
bdi04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

843545

843543

843544

103830813

106401282

106451248

106401283

107895068

107951288

107920422

102615398

102615123

100782611

100776720

100254556

104882761

7494433

25491797

25491799

11430201

101256981

102597245

107785416

107811431

107791419

112937603

112935994

4324944

100502313

100381733

123089947

123134474

123134464

123444771

123444777

123444773

8060993

8062441

8055194

112270659

100824586

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	1	3	3	2	2	2	2	3	1	1	3	3	3	3	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G72140 (ath-r.7 coexpression data)

Top 50 enrichment test to AT1G72140 (ath-r.7 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**