ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100191543	uncharacterized LOC100191543
zma-r.6	100191543	uncharacterized LOC100191543
zma-u.5	100285136	calmodulin binding protein
zma-u.5	100286080	uncharacterized LOC100286080
zma-u.5	103649348	calmodulin-binding protein 60 C
sbi-r.1	8073348	protein SAR DEFICIENT 1
sbi-r.1	8071013	protein SAR DEFICIENT 1
osa-u.5	4325688	protein SAR DEFICIENT 1
osa-u.5	4352457	calmodulin-binding protein 60 C
osa-u.5	4352498	calmodulin-binding protein 60 D
tae-r.2	123105718	calmodulin-binding protein 60 A
hvu-r.1	123439266	calmodulin-binding protein 60 C-like
hvu-r.1	123453101	calmodulin-binding protein 60 A-like
hvu-r.1	123426811	calmodulin-binding protein 60 D-like
bdi-r.1	100822237	calmodulin-binding protein 60 B
bdi-r.1	100825599	protein SAR DEFICIENT 1
ath-u.5	AT2G18750	Calmodulin-binding protein
ath-u.5	SARD1	Calmodulin binding protein-like protein
ath-u.5	AT5G62570	Calmodulin binding protein-like protein
gma-u.5	100803213	protein SAR DEFICIENT 1
gma-u.5	100804548	calmodulin-binding protein 60 A
gma-u.5	100805759	calmodulin-binding protein 60 D
sly-u.5	101256576	calmodulin-binding protein 60 A
sly-u.5	101245373	calmodulin-binding protein 60 D
sly-u.5	101255950	calmodulin-binding protein 60 B
bra-r.6	103845193	calmodulin-binding protein 60 B
bra-r.6	103830730	protein SAR DEFICIENT 1
bra-r.6	103854686	calmodulin-binding protein 60 G
vvi-u.5	100255894	calmodulin-binding protein 60 E
vvi-u.5	100242382	protein SAR DEFICIENT 1
vvi-u.5	100255354	calmodulin-binding protein 60 A
ppo-u.5	7485589	calmodulin-binding protein 60 B
ppo-u.5	7455668	calmodulin-binding protein 60 F
ppo-u.5	7478912	calmodulin-binding protein 60 B
mtr-u.5	11436711	protein SAR DEFICIENT 1
mtr-u.5	11426495	protein SAR DEFICIENT 1
mtr-u.5	11423826	calmodulin-binding protein 60 D
ghi-r.1	107924734	calmodulin-binding protein 60 B
ghi-r.1	107919851	calmodulin-binding protein 60 B
ghi-r.1	107918457	calmodulin-binding protein 60 C
bna-r.1	106446637	calmodulin-binding protein 60 E
bna-r.1	106442801	calmodulin-binding protein 60 D
bna-r.1	106441702	calmodulin-binding protein 60 C
sot-r.1	102581064	calmodulin-binding protein 60 B-like
sot-r.1	102583829	calmodulin-binding protein 60 A
sot-r.1	102591443	calmodulin-binding protein 60 B-like
cit-r.1	102612087	protein SAR DEFICIENT 1-like
cit-r.1	102625149	hypothetical protein
nta-r.1	107780214	calmodulin-binding protein 60 A
nta-r.1	107804452	calmodulin-binding protein 60 B
nta-r.1	107806239	calmodulin-binding protein 60 B

Top 50 coexpressed genes to 100191543 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100191543 (zma-u.5 coexpression data)

CoexMap"100191543"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0080142 [list] [network] regulation of salicylic acid biosynthetic process

(15 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3371 genes)

IEA

GO MF

GO:0005516 [list] [network] calmodulin binding	(47 genes)	IEA
GO:0043565 [list] [network] sequence-specific DNA binding	(823 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1355 genes)	IEA

Protein

NP_001352428.1 [sequence] [blastp]
XP_008667040.1 [sequence] [blastp]
XP_020402930.1 [sequence] [blastp]
XP_020402932.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 4, cyto 1, plas 1, cysk 1, cysk_plas 1, cyto_plas 1	(predict for NP_001352428.1)
chlo 4, nucl 4, cysk 1, cyto 1, plas 1, cyto_plas 1	(predict for XP_008667040.1)
nucl 4, chlo 2, plas 1, golg 1, chlo_mito 1, golg_plas 1	(predict for XP_020402930.1)
nucl 4, chlo 2, plas 1, golg 1, chlo_mito 1, golg_plas 1	(predict for XP_020402932.1)

Subcellular
localization
TargetP

other 8, mito 3	(predict for NP_001352428.1)
other 8, mito 3	(predict for XP_008667040.1)
other 7, mito 6	(predict for XP_020402930.1)
other 7, mito 6	(predict for XP_020402932.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100191543	zma-r.6 for 100191543	zma-u.5 for 100285136	zma-u.5 for 100286080	zma-u.5 for 103649348	sbi-r.1 for 8073348	sbi-r.1 for 8071013	osa-u.5 for 4325688	osa-u.5 for 4352457	osa-u.5 for 4352498	tae-r.2 for 123105718	hvu-r.1 for 123439266	hvu-r.1 for 123453101	hvu-r.1 for 123426811	bdi-r.1 for 100822237	bdi-r.1 for 100825599	ath-u.5 for AT2G18750	ath-u.5 for SARD1	ath-u.5 for AT5G62570	gma-u.5 for 100803213	gma-u.5 for 100804548	gma-u.5 for 100805759	sly-u.5 for 101256576	sly-u.5 for 101245373	sly-u.5 for 101255950	bra-r.6 for 103845193	bra-r.6 for 103830730	bra-r.6 for 103854686	vvi-u.5 for 100255894	vvi-u.5 for 100242382	vvi-u.5 for 100255354	ppo-u.5 for 7485589	ppo-u.5 for 7455668	ppo-u.5 for 7478912	mtr-u.5 for 11436711	mtr-u.5 for 11426495	mtr-u.5 for 11423826	ghi-r.1 for 107924734	ghi-r.1 for 107919851	ghi-r.1 for 107918457	bna-r.1 for 106446637	bna-r.1 for 106442801	bna-r.1 for 106441702	sot-r.1 for 102581064	sot-r.1 for 102583829	sot-r.1 for 102591443	cit-r.1 for 102612087	cit-r.1 for 102625149	nta-r.1 for 107780214	nta-r.1 for 107804452	nta-r.1 for 107806239

Ortholog

Ortholog ID: 166

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

Calmodulin-binding protein 60 C

Protein SAR DEFICIENT 1

calmodulin binding protein

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

protein SAR DEFICIENT 1

calmodulin-binding protein 60 D

calmodulin-binding protein 60 C

calmodulin-binding protein 60 B

calmodulin-binding protein 60 B-like

calmodulin-binding protein 60 D-like

calmodulin-binding protein 60 B

calmodulin-binding protein 60 A

calmodulin-binding protein 60 D

Calmodulin-binding protein

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 B

protein SAR DEFICIENT 1-like

calmodulin-binding protein 60 D

protein SAR DEFICIENT 1

calmodulin-binding protein 60 C

calmodulin-binding protein 60 D

calmodulin-binding protein 60 A

calmodulin-binding protein 60 C

calmodulin-binding protein 60 B

calmodulin-binding protein 60 A

protein SAR DEFICIENT 1

calmodulin-binding protein 60 B

protein SAR DEFICIENT 1

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 C

calmodulin-binding protein 60 B

calmodulin-binding protein 60 D

calmodulin-binding protein 60 A

protein SAR DEFICIENT 1-like

protein SAR DEFICIENT 1

protein SAR DEFICIENT 1-like

calmodulin-binding protein 60 A

protein SAR DEFICIENT 1

calmodulin-binding protein 60 B

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00330	Arginine and proline metabolism	2
sbi00410	beta-Alanine metabolism	2
sbi00770	Pantothenate and CoA biosynthesis	2
sbi04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04136	Autophagy - other	2
bdi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04075	Plant hormone signal transduction	3
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	6
vvi04016	MAPK signaling pathway - plant	4
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	2
ppo04075	Plant hormone signal transduction	2
ppo04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	2
ppo01250	Biosynthesis of nucleotide sugars	2
ppo04626	Plant-pathogen interaction	2
ppo01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04016	MAPK signaling pathway - plant	3
cit04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00905	Brassinosteroid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00564	Glycerophospholipid metabolism	2
nta00760	Nicotinate and nicotinamide metabolism	2
nta01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

103653644

103649824

100283672

8079393

8066356

4325688

4332576

4328487

123076922

123406352

123404800

100822237

100835614

100840855

816390

835862

828685

100812605

100816427

100798493

101255950

101256262

101268806

103831855

103874061

103863555

100255354

100256775

100264980

7478912

18097458

7453751

120575779

11421955

25496840

107886116

107914004

107925256

106430980

106397962

106346511

102583829

102604313

102585109

102612087

102629177

107800838

107830019

107831052

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Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	5	2	3	1	3	2	3	3	3	3	3	3	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100191543 (zma-u.5 coexpression data)

Top 50 enrichment test to 100191543 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**