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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100192067   Ribonucleoprotein like protein 
 zma-r.6   100192067   Ribonucleoprotein like protein 
 zma-m.5   100192067   Ribonucleoprotein like protein 
 zma-u.5   103631917   DAZ-associated protein 1 
 osa-u.5   4342307   heterogeneous nuclear ribonucleoprotein 1 
 ath-u.5   RBP1   RNA-binding protein 1 
 gma-u.5   100816822   RNA-binding protein 1 
 gma-u.5   100786665   RNA-binding protein 1 
 sly-u.5   101254896   RNA-binding protein 1 
 vvi-u.5   100255821   uncharacterized LOC100255821 
 ppo-u.5   7472638   RNA-binding protein 1 
 mtr-u.5   25489991   heterogeneous nuclear ribonucleoprotein 1 

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Top 50 coexpressed genes to 100192067 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100192067 (zma-u.5 coexpression data)

CoexMap"100192067"


zmaLOC100192067 | Entrez gene ID : 100192067      
Species zma osa ath gma sly vvi ppo mtr sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03015 [list] [network] mRNA surveillance pathway (165 genes)
GO BP
GO:0006417 [list] [network] regulation of translation  (62 genes)  IEA  
GO CC
GO MF
GO:0003729 [list] [network] mRNA binding  (346 genes)  IEA  
Protein NP_001403238.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  pero 1  (predict for NP_001403238.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001403238.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100192067

.
zma-r.6
for
100192067

.
zma-m.5
for
100192067

.
zma-u.5
for
103631917

.
osa-u.5
for
4342307

.
ath-u.5
for
RBP1

.
gma-u.5
for
100816822

.
gma-u.5
for
100786665

.
sly-u.5
for
101254896

.
vvi-u.5
for
100255821

.
ppo-u.5
for
7472638

.
mtr-u.5
for
25489991

.


Ortholog ID: 8285
Species ath gma sly osa zma zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot bdi nta nta
Symbol RBP1 LOC100816822 LOC101254896 LOC4342307 LOC103631917 LOC100192067 LOC103838609 LOC100255821 LOC7472638 LOC25489991 LOC123052903 LOC123188907 LOC123426305 LOC121218187 LOC107930589 LOC106366596 LOC111211184 LOC8084305 LOC8084186 LOC102582431 LOC100846266 LOC107803798 LOC107791027
Function* RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1 DAZ-associated protein 1 Ribonucleoprotein like protein RNA-binding protein 1 uncharacterized LOC100255821 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1 RNA-binding protein 1 RNA-binding protein 1 heterogeneous nuclear ribonucleoprotein 1-like RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1 RNA-binding protein 1-like heterogeneous nuclear ribonucleoprotein 1 RNA-binding protein 3 RNA-binding protein 1-like heterogeneous nuclear ribonucleoprotein 1 RNA-binding protein 1 RNA-binding protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
sly03040 Spliceosome 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00600 Sphingolipid metabolism 2
zma04382 Cornified envelope formation 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae03015 mRNA surveillance pathway 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04136 Autophagy - other 6
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04075 Plant hormone signal transduction 3
sbi04626 Plant-pathogen interaction 3
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 4
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03030 DNA replication 2
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842216 100816822 101254896 4342307 103631917 100192067 103838609 100255821 7472638 25489991 123052903 123188907 123426305 121218187 107930589 106366596 111211184 8084305 8084186 102582431 100846266 107803798 107791027
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