ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100193661	uncharacterized LOC100193661
zma-r.6	100193661	uncharacterized LOC100193661
zma-m.5	100193661	uncharacterized LOC100193661
zma-u.5	100191158	uncharacterized LOC100191158
sbi-r.1	8086277	uncharacterized LOC8086277
osa-u.5	4349524	uncharacterized LOC4349524
osa-u.5	4342444	uncharacterized LOC4342444
osa-u.5	4339926	uncharacterized LOC4339926
tae-r.2	123167190	uncharacterized LOC123167190
tae-r.2	123050958	uncharacterized LOC123050958
tae-r.2	123150300	uncharacterized LOC123150300
hvu-r.1	123437146	uncharacterized LOC123437146
hvu-r.1	123411533	uncharacterized LOC123411533
bdi-r.1	100843192	uncharacterized LOC100843192
bdi-r.1	100824820	uncharacterized LOC100824820
ath-u.5	AT4G25030	Serine/Threonine-kinase
ath-u.5	AT5G45410	zinc finger B-box protein
gma-u.5	100808780	uncharacterized LOC100808780
gma-u.5	100778628	uncharacterized LOC100778628
gma-u.5	100811917	uncharacterized LOC100811917
sly-u.5	101259778	uncharacterized LOC101259778
sly-u.5	101253087	uncharacterized LOC101253087
bra-r.6	103862826	uncharacterized LOC103862826
bra-r.6	103861522	uncharacterized LOC103861522
bra-r.6	103839662	uncharacterized LOC103839662
vvi-u.5	100261262	uncharacterized LOC100261262
vvi-u.5	100259846	uncharacterized LOC100259846
ppo-u.5	7479892	uncharacterized LOC7479892
ppo-u.5	7495097	uncharacterized LOC7495097
ppo-u.5	18094071	uncharacterized LOC18094071
mtr-u.5	11407099	uncharacterized LOC11407099
mtr-u.5	11415231	uncharacterized LOC11415231
ghi-r.1	107904088	uncharacterized LOC107904088
ghi-r.1	107913478	uncharacterized LOC107913478
ghi-r.1	107919755	uncharacterized LOC107919755
bna-r.1	BNAA02G23910D	uncharacterized BNAA02G23910D
bna-r.1	106361735	uncharacterized LOC106361735
bna-r.1	106366741	uncharacterized LOC106366741
sot-r.1	102580945	uncharacterized LOC102580945
sot-r.1	102587190	uncharacterized LOC102587190
sot-r.1	107062283	uncharacterized LOC107062283
cit-r.1	102609997	hypothetical protein
cit-r.1	102625789	uncharacterized LOC102625789
nta-r.1	107827606	uncharacterized LOC107827606
nta-r.1	107820392	uncharacterized LOC107820392
nta-r.1	107815418	uncharacterized LOC107815418
cre-r.1	CHLRE_17g710900v5	uncharacterized protein
cre-r.1	CHLRE_17g711000v5	uncharacterized protein

Top 50 coexpressed genes to 100193661 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100193661 (zma-u.5 coexpression data)

CoexMap"100193661"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(803 genes)

IEA

GO MF

Protein

NP_001132226.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, E.R._plas 2, E.R. 2, plas 2, chlo_mito 2, nucl_plas 1

(predict for NP_001132226.1)

Subcellular
localization
TargetP

other 7

(predict for NP_001132226.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100193661	zma-r.6 for 100193661	zma-m.5 for 100193661	zma-u.5 for 100191158	sbi-r.1 for 8086277	osa-u.5 for 4349524	osa-u.5 for 4342444	osa-u.5 for 4339926	tae-r.2 for 123167190	tae-r.2 for 123050958	tae-r.2 for 123150300	hvu-r.1 for 123437146	hvu-r.1 for 123411533	bdi-r.1 for 100843192	bdi-r.1 for 100824820	ath-u.5 for AT4G25030	ath-u.5 for AT5G45410	gma-u.5 for 100808780	gma-u.5 for 100778628	gma-u.5 for 100811917	sly-u.5 for 101259778	sly-u.5 for 101253087	bra-r.6 for 103862826	bra-r.6 for 103861522	bra-r.6 for 103839662	vvi-u.5 for 100261262	vvi-u.5 for 100259846	ppo-u.5 for 7479892	ppo-u.5 for 7495097	ppo-u.5 for 18094071	mtr-u.5 for 11407099	mtr-u.5 for 11415231	ghi-r.1 for 107904088	ghi-r.1 for 107913478	ghi-r.1 for 107919755	bna-r.1 for BNAA02G23910D	bna-r.1 for 106361735	bna-r.1 for 106366741	sot-r.1 for 102580945	sot-r.1 for 102587190	sot-r.1 for 107062283	cit-r.1 for 102609997	cit-r.1 for 102625789	nta-r.1 for 107827606	nta-r.1 for 107820392	nta-r.1 for 107815418	cre-r.1 for CHLRE_17g710900v5	cre-r.1 for CHLRE_17g711000v5

Ortholog

Ortholog ID: 2288

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

uncharacterized LOC100193661

uncharacterized LOC100191158

uncharacterized LOC8086277

uncharacterized LOC4349524

uncharacterized LOC4342444

uncharacterized LOC4339926

uncharacterized LOC123088274

uncharacterized LOC123126811

uncharacterized LOC123181517

uncharacterized LOC123437146

uncharacterized LOC123411533

uncharacterized LOC100843192

uncharacterized LOC100824820

Serine/Threonine-kinase

zinc finger B-box protein

uncharacterized LOC100808780

uncharacterized LOC100778628

uncharacterized LOC100811917

uncharacterized LOC101259778

uncharacterized LOC101253087

uncharacterized LOC103862826

uncharacterized LOC103861522

uncharacterized LOC103853633

uncharacterized LOC100261262

uncharacterized LOC100259846

uncharacterized LOC7479892

uncharacterized LOC7495097

uncharacterized LOC18094071

uncharacterized LOC11407099

uncharacterized LOC11415231

uncharacterized LOC107904088

uncharacterized LOC107913478

uncharacterized LOC107946810

uncharacterized BNAA02G23910D

uncharacterized LOC106366741

uncharacterized LOC106418477

uncharacterized LOC102587190

uncharacterized LOC107062283

uncharacterized LOC102586253

hypothetical protein

uncharacterized LOC102625789

uncharacterized LOC107820392

uncharacterized LOC107808589

uncharacterized LOC107776128

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3
zma00860	Porphyrin metabolism	2
zma01240	Biosynthesis of cofactors	2
zma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	2
osa03008	Ribosome biogenesis in eukaryotes	2
osa00480	Glutathione metabolism	2
osa00020	Citrate cycle (TCA cycle)	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
hvu01230	Biosynthesis of amino acids	4
hvu00940	Phenylpropanoid biosynthesis	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi00190	Oxidative phosphorylation	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	3
ath00020	Citrate cycle (TCA cycle)	2
ath00190	Oxidative phosphorylation	2
ath01200	Carbon metabolism	2
ath00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3
ath00053	Ascorbate and aldarate metabolism	3
ath00020	Citrate cycle (TCA cycle)	2
ath01200	Carbon metabolism	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	4
gma00020	Citrate cycle (TCA cycle)	2
gma00190	Oxidative phosphorylation	2
gma01200	Carbon metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00860	Porphyrin metabolism	3
gma01240	Biosynthesis of cofactors	2
gma00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	3
sly00941	Flavonoid biosynthesis	3
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00230	Purine metabolism	5
bra00920	Sulfur metabolism	5
bra01320	Sulfur cycle	5
bra00261	Monobactam biosynthesis	3
bra00450	Selenocompound metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo01250	Biosynthesis of nucleotide sugars	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	5
ppo00620	Pyruvate metabolism	4
ppo00020	Citrate cycle (TCA cycle)	3
ppo00270	Cysteine and methionine metabolism	3
ppo00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo03010	Ribosome	3
ppo01200	Carbon metabolism	3
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	9
mtr00020	Citrate cycle (TCA cycle)	7
mtr01210	2-Oxocarboxylic acid metabolism	5
mtr01230	Biosynthesis of amino acids	5
mtr01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	2
ghi00230	Purine metabolism	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	4
ghi04141	Protein processing in endoplasmic reticulum	4
ghi00030	Pentose phosphate pathway	2
ghi00230	Purine metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	3
cit01200	Carbon metabolism	3
cit01230	Biosynthesis of amino acids	3
cit00860	Porphyrin metabolism	2
cit00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	2
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00190	Oxidative phosphorylation	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00030	Pentose phosphate pathway	4
nta00480	Glutathione metabolism	4
nta01200	Carbon metabolism	4
nta04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

100193661

100191158

8086277

4349524

4342444

4339926

123088274

123126811

123181517

123437146

123411533

100843192

100824820

828606

834577

100808780

100778628

100811917

101259778

101253087

103862826

103861522

103853633

100261262

100259846

7479892

7495097

18094071

11407099

11415231

107904088

107913478

107946810

106381669

106366741

106418477

102587190

107062283

102586253

102609997

102625789

107820392

107808589

107776128

5722414

66056954

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	1	3	3	2	2	2	3	2	3	2	3	2	3	3	3	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100193661 (zma-u.5 coexpression data)

Top 50 enrichment test to 100193661 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**