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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100194340   uncharacterized LOC100194340 
 zma-r.6   100194340   uncharacterized LOC100194340 
 zma-m.5   100194340   uncharacterized LOC100194340 
 zma-u.5   100193902   uncharacterized LOC100193902 
 osa-u.5   4336261   transcription factor bHLH153 
 ath-u.5   AT2G31730   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT1G05710   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 gma-u.5   100527660   uncharacterized LOC100527660 
 gma-u.5   100809747   transcription factor bHLH153 
 sly-u.5   543581   transcription factor bHLH113 
 vvi-u.5   100243890   transcription factor bHLH153 
 ppo-u.5   18104588   transcription factor bHLH153 
 ppo-u.5   7498099   transcription factor bHLH153 
 mtr-u.5   11444608   transcription factor bHLH153 

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Top 50 coexpressed genes to 100194340 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100194340 (zma-u.5 coexpression data)

CoexMap"100194340"


zmaLOC100194340 | Entrez gene ID : 100194340      
Species zma osa ath gma sly vvi ppo mtr sot hvu tae cit sbi ghi cre bna nta bdi bra
Paralog 4 1 2 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (427 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3371 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (169 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (224 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (663 genes)  IEA  
Protein NP_001132848.1 [sequence] [blastp]
XP_008667302.1 [sequence] [blastp]
XP_008667303.1 [sequence] [blastp]
XP_008667304.1 [sequence] [blastp]
XP_008667305.1 [sequence] [blastp]
XP_020403042.1 [sequence] [blastp]
XP_020403043.1 [sequence] [blastp]
XP_035820466.1 [sequence] [blastp]
XP_035820467.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9  (predict for NP_001132848.1)
nucl 9  (predict for XP_008667302.1)
nucl 9  (predict for XP_008667303.1)
nucl 6,  chlo 3,  cysk_nucl 3  (predict for XP_008667304.1)
nucl 6,  chlo 3,  cysk_nucl 3  (predict for XP_008667305.1)
nucl 9  (predict for XP_020403042.1)
nucl 6,  chlo 3,  cysk_nucl 3  (predict for XP_020403043.1)
nucl 9  (predict for XP_035820466.1)
nucl 6,  chlo 3,  cysk_nucl 3  (predict for XP_035820467.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001132848.1)
other 3  (predict for XP_008667302.1)
other 3  (predict for XP_008667303.1)
other 3  (predict for XP_008667304.1)
other 3  (predict for XP_008667305.1)
other 3  (predict for XP_020403042.1)
other 3  (predict for XP_020403043.1)
other 3  (predict for XP_035820466.1)
other 3  (predict for XP_035820467.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100194340

.
zma-r.6
for
100194340

.
zma-m.5
for
100194340

.
zma-u.5
for
100193902

.
osa-u.5
for
4336261

.
ath-u.5
for
AT2G31730

.
ath-u.5
for
AT1G05710

.
gma-u.5
for
100527660

.
gma-u.5
for
100809747

.
sly-u.5
for
543581

.
vvi-u.5
for
100243890

.
ppo-u.5
for
18104588

.
ppo-u.5
for
7498099

.
mtr-u.5
for
11444608

.


Ortholog ID: 5268
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol AT2G31730 AT1G05710 LOC100809747 LOC100527660 LOC543581 LOC4336261 LOC100194340 LOC100193902 LOC103844099 LOC103867701 LOC100243890 LOC18104588 LOC7498099 LOC11444608 LOC123189617 LOC123053739 LOC123427093 LOC107903004 LOC107927346 LOC106441774 LOC110436601 LOC102606118 LOC102616788 LOC100837747 LOC107814373 LOC107825642
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH153 uncharacterized LOC100527660 transcription factor bHLH113 transcription factor bHLH153 uncharacterized LOC100194340 uncharacterized LOC100193902 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153-like transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153-like transcription factor bHLH153-like transcription factor bHLH113-like transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153 transcription factor bHLH153
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 2
ath04626 Plant-pathogen interaction 2
ath00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 5
ghi03420 Nucleotide excision repair 5
ghi03430 Mismatch repair 5
ghi03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
cit04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817730 837078 100809747 100527660 543581 4336261 100194340 100193902 103844099 103867701 100243890 18104588 7498099 11444608 123189617 123053739 123427093 107903004 107927346 106441774 110436601 102606118 102616788 100837747 107814373 107825642
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