ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100194365	uncharacterized LOC100194365
zma-r.6	100194365	uncharacterized LOC100194365
zma-m.5	100194365	uncharacterized LOC100194365
zma-u.5	100284857	uncharacterized LOC100284857
zma-u.5	100383246	uncharacterized LOC100383246
sbi-r.1	8059799	nuclear transcription factor Y subunit A-7
sbi-r.1	8070158	nuclear transcription factor Y subunit A-7
osa-u.5	4352778	nuclear transcription factor Y subunit A-7
osa-u.5	4344874	nuclear transcription factor Y subunit A-4
tae-r.2	123110357	nuclear transcription factor Y subunit A-7
tae-r.2	123102190	nuclear transcription factor Y subunit A-7
tae-r.2	100037532	nuclear transcription factor Y subunit A-7
hvu-r.1	123449586	nuclear transcription factor Y subunit A-7-like
hvu-r.1	123396343	nuclear transcription factor Y subunit A-7
bdi-r.1	100842793	nuclear transcription factor Y subunit A-7
bdi-r.1	100844028	nuclear transcription factor Y subunit A-7
ath-u.5	NF-YA4	nuclear factor Y, subunit A4
ath-u.5	NF-YA7	nuclear factor Y, subunit A7
gma-u.5	100499754	putative CCAAT-binding transcription factor
gma-u.5	NF-YA04	nuclear transcription factor Y subunit A-4
gma-u.5	NF-YA16	nuclear transcription factor Y subunit A-16
sly-u.5	101260988	nuclear transcription factor Y subunit A-7
bra-r.6	103840389	nuclear transcription factor Y subunit A-7
bra-r.6	103867423	nuclear transcription factor Y subunit A-4
bra-r.6	103832749	nuclear transcription factor Y subunit A-5
vvi-u.5	100249692	nuclear transcription factor Y subunit A-7
ppo-u.5	7487567	nuclear transcription factor Y subunit A-7
ppo-u.5	18103293	nuclear transcription factor Y subunit A-7
mtr-u.5	11413865	nuclear transcription factor Y subunit A-7
ghi-r.1	107930306	nuclear transcription factor Y subunit A-7
ghi-r.1	107958516	nuclear transcription factor Y subunit A-7
ghi-r.1	107906314	nuclear transcription factor Y subunit A-7
bna-r.1	106396602	nuclear transcription factor Y subunit A-4
bna-r.1	125600621	nuclear transcription factor Y subunit A-4-like
sot-r.1	102579930	nuclear transcription factor Y subunit A-7-like
sot-r.1	102600275	nuclear transcription factor Y subunit A-7
cit-r.1	102608084	nuclear transcription factor Y subunit A-7
nta-r.1	107787566	nuclear transcription factor Y subunit A-7
nta-r.1	107821024	uncharacterized LOC107821024
nta-r.1	107807858	nuclear transcription factor Y subunit A-7-like

Top 50 coexpressed genes to 100194365 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100194365 (zma-u.5 coexpression data)

CoexMap"100194365"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1994 genes)

IEA

GO CC

GO:0016602 [list] [network] CCAAT-binding factor complex

(26 genes)

IEA

GO MF

GO:0003700 [list] [network] DNA-binding transcription factor activity	(1355 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2288 genes)	IEA

Protein

NP_001346409.1 [sequence] [blastp]
XP_008664541.1 [sequence] [blastp]
XP_008664545.1 [sequence] [blastp]
XP_008664550.1 [sequence] [blastp]
XP_035820016.1 [sequence] [blastp]
XP_035820017.1 [sequence] [blastp]
XP_035820018.1 [sequence] [blastp]
XP_035820019.1 [sequence] [blastp]
XP_035820023.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9	(predict for NP_001346409.1)
nucl 9	(predict for XP_008664541.1)
nucl 9	(predict for XP_008664545.1)
nucl 9	(predict for XP_008664550.1)
nucl 9	(predict for XP_035820016.1)
nucl 9, chlo 1, extr 1	(predict for XP_035820017.1)
nucl 9	(predict for XP_035820018.1)
nucl 9	(predict for XP_035820019.1)
nucl 9	(predict for XP_035820023.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001346409.1)
other 7, mito 3	(predict for XP_008664541.1)
other 8	(predict for XP_008664545.1)
other 7	(predict for XP_008664550.1)
other 8	(predict for XP_035820016.1)
other 7	(predict for XP_035820017.1)
other 7, mito 3	(predict for XP_035820018.1)
other 8	(predict for XP_035820019.1)
other 8	(predict for XP_035820023.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100194365	zma-r.6 for 100194365	zma-m.5 for 100194365	zma-u.5 for 100284857	zma-u.5 for 100383246	sbi-r.1 for 8059799	sbi-r.1 for 8070158	osa-u.5 for 4352778	osa-u.5 for 4344874	tae-r.2 for 123110357	tae-r.2 for 123102190	tae-r.2 for 100037532	hvu-r.1 for 123449586	hvu-r.1 for 123396343	bdi-r.1 for 100842793	bdi-r.1 for 100844028	ath-u.5 for NF-YA4	ath-u.5 for NF-YA7	gma-u.5 for 100499754	gma-u.5 for NF-YA04	gma-u.5 for NF-YA16	sly-u.5 for 101260988	bra-r.6 for 103840389	bra-r.6 for 103867423	bra-r.6 for 103832749	vvi-u.5 for 100249692	ppo-u.5 for 7487567	ppo-u.5 for 18103293	mtr-u.5 for 11413865	ghi-r.1 for 107930306	ghi-r.1 for 107958516	ghi-r.1 for 107906314	bna-r.1 for 106396602	bna-r.1 for 125600621	sot-r.1 for 102579930	sot-r.1 for 102600275	cit-r.1 for 102608084	nta-r.1 for 107787566	nta-r.1 for 107821024	nta-r.1 for 107807858

Ortholog

Ortholog ID: 3914

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

NF-YA4

NF-YA7

LOC100499754

NF-YA04

NF-YA16

Function^*

uncharacterized LOC100194365

uncharacterized LOC100284857

uncharacterized LOC100383246