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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100194408   uncharacterized LOC100194408 
 zma-r.6   100194408   uncharacterized LOC100194408 
 zma-m.5   100194408   uncharacterized LOC100194408 
 osa-u.5   4331494   exosome complex exonuclease RRP44 homolog A 
 ath-u.5   EMB2763   ribonuclease II family protein 
 gma-u.5   100806652   exosome complex exonuclease RRP44 homolog A 
 gma-u.5   100782456   exosome complex exonuclease RRP44 homolog A 
 sly-u.5   101263664   exosome complex exonuclease RRP44 homolog A 
 vvi-u.5   100267912   exosome complex exonuclease RRP44 homolog A 
 ppo-u.5   18101070   exosome complex exonuclease RRP44 homolog A 
 mtr-u.5   11424636   exosome complex exonuclease RRP44 homolog A 

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Top 50 coexpressed genes to 100194408 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100194408 (zma-u.5 coexpression data)

CoexMap"100194408"


zmaLOC100194408 | Entrez gene ID : 100194408      
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG zma03018 [list] [network] RNA degradation (140 genes)
GO BP
GO:0071031 [list] [network] nuclear mRNA surveillance of mRNA 3'-end processing  (1 genes)  IEA  
GO:0016075 [list] [network] rRNA catabolic process  (13 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (15 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (25 genes)  IEA  
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (48 genes)  IEA  
GO:0004519 [list] [network] endonuclease activity  (86 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001350210.1 [sequence] [blastp]
XP_020402267.1 [sequence] [blastp]
XP_035820050.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  mito 3,  chlo 1,  plas 1,  cyto_mito 1,  cysk_nucl 1  (predict for NP_001350210.1)
chlo 7,  nucl 1,  cyto 1,  plas 1,  vacu 1,  cyto_nucl 1,  nucl_plas 1,  cyto_plas 1  (predict for XP_020402267.1)
cyto 5,  nucl 3,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for XP_035820050.1)
Subcellular
localization
TargetP
mito 7,  other 6  (predict for NP_001350210.1)
other 8  (predict for XP_020402267.1)
other 5,  mito 3  (predict for XP_035820050.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100194408
zma-r.6
for
100194408
zma-m.5
for
100194408
osa-u.5
for
4331494
ath-u.5
for
EMB2763
gma-u.5
for
100806652
gma-u.5
for
100782456
sly-u.5
for
101263664
vvi-u.5
for
100267912
ppo-u.5
for
18101070
mtr-u.5
for
11424636


Ortholog ID: 9983
Species zma sbi osa tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna cit nta nta cre
Symbol LOC100194408 LOC8085691 LOC4331494 LOC123093577 LOC123098847 LOC123449790 LOC100829846 EMB2763 LOC100782456 LOC100806652 LOC101263664 LOC103837810 LOC100267912 LOC18101070 LOC11424636 LOC107954781 LOC107955297 LOC106401403 LOC106366378 LOC102613015 LOC107765045 LOC107829893 CHLRE_14g613850v5
Function* uncharacterized LOC100194408 exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A ribonuclease II family protein exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A exosome complex exonuclease RRP44 homolog A-like exosome complex exonuclease RRP44 homolog A uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
zma03008 Ribosome biogenesis in eukaryotes 2
zma03013 Nucleocytoplasmic transport 2
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
sbi03040 Spliceosome 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03015 mRNA surveillance pathway 4
tae03083 Polycomb repressive complex 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 3
hvu03440 Homologous recombination 3
hvu03420 Nucleotide excision repair 2
hvu03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
bdi03018 RNA degradation 2
bdi03040 Spliceosome 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
gma03440 Homologous recombination 2
gma04120 Ubiquitin mediated proteolysis 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 3
gma00514 Other types of O-glycan biosynthesis 2
gma03440 Homologous recombination 2
gma03040 Spliceosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
bra03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03018 RNA degradation 2
bna03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
bna03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta03018 RNA degradation 2
nta03015 mRNA surveillance pathway 2
nta00970 Aminoacyl-tRNA biosynthesis 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
cre03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100194408 8085691 4331494 123093577 123098847 123449790 100829846 816257 100782456 100806652 101263664 103837810 100267912 18101070 11424636 107954781 107955297 106401403 106366378 102613015 107765045 107829893 66056185
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