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Orthologous genes in OrthoFinder**

Species Gene Description
 gma-u.5   100233234   cryptochrome 2 
 gma-r.7   100233234   cryptochrome 2 
 gma-u.5   CRY1a   cryptochrome 1 
 gma-u.5   100786551   cryptochrome-1-like 
 gma-u.5   100797839   cryptochrome-1-like 
 mtr-u.5   11418875   cryptochrome-1 
 mtr-u.5   25484452   cryptochrome-1 
 mtr-u.5   11428875   cryptochrome-1 
 ppo-u.5   7486597   cryptochrome-1 
 ppo-u.5   18102473   cryptochrome-1 
 ppo-u.5   7495156   cryptochrome-1 
 ath-u.5   CRY1   cryptochrome 1 
 ath-u.5   CRY2   cryptochrome 2 
 vvi-u.5   100254022   cryptochrome-1 
 vvi-u.5   100247664   cryptochrome-1 
 sly-u.5   CRY2   cryptochrome 2 
 sly-u.5   Cry1b   cryptochrome 1b 
 sly-u.5   CRY1a   cryptochrome 1 
 osa-u.5   9270575   cryptochrome-1 
 osa-u.5   4336008   cryptochrome-1 
 osa-u.5   4329738   cryptochrome-1 
 zma-u.5   100194126   cryptochrome2 
 zma-u.5   100502533   cryptochrome 2 

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Top 50 coexpressed genes to 100233234 (gma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100233234 (gma-u.5 coexpression data)

CoexMap"100233234"


gmaLOC100233234 | Entrez gene ID : 100233234      
Species gma mtr ppo ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 5 3 3 2 2 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG gmx04712 [list] [network] Circadian rhythm - plant (105 genes)
GO BP
GO:0032922 [list] [network] circadian regulation of gene expression  (8 genes)  IEA  
GO:0043153 [list] [network] entrainment of circadian clock by photoperiod  (8 genes)  IEA  
GO:0009785 [list] [network] blue light signaling pathway  (13 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (5531 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (9233 genes)  IEA  
GO MF
GO:0009882 [list] [network] blue light photoreceptor activity  (7 genes)  IEA  
GO:0003904 [list] [network] deoxyribodipyrimidine photo-lyase activity  (13 genes)  IEA  
GO:0071949 [list] [network] FAD binding  (123 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (3517 genes)  IEA  
Protein NP_001235220.1 [sequence] [blastp]
XP_006588363.1 [sequence] [blastp]
XP_006588364.1 [sequence] [blastp]
XP_040861469.1 [sequence] [blastp]
XP_040861470.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 2,  mito 1,  cysk 1  (predict for NP_001235220.1)
chlo 4,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_006588363.1)
chlo 4,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_006588364.1)
chlo 5,  nucl 2,  mito 1,  cysk 1  (predict for XP_040861469.1)
chlo 5,  nucl 2,  mito 1,  cysk 1  (predict for XP_040861470.1)
Subcellular
localization
TargetP
other 6,  mito 5  (predict for NP_001235220.1)
other 6,  mito 5  (predict for XP_006588363.1)
other 6,  mito 5  (predict for XP_006588364.1)
other 6,  mito 5  (predict for XP_040861469.1)
other 6,  mito 5  (predict for XP_040861470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

gma-u.5
for
100233234
gma-r.7
for
100233234
gma-u.5
for
CRY1a
gma-u.5
for
100786551
gma-u.5
for
100797839
mtr-u.5
for
11418875
mtr-u.5
for
25484452
mtr-u.5
for
11428875
ppo-u.5
for
7486597
ppo-u.5
for
18102473
ppo-u.5
for
7495156
ath-u.5
for
CRY1
ath-u.5
for
CRY2
vvi-u.5
for
100254022
vvi-u.5
for
100247664
sly-u.5
for
CRY2
sly-u.5
for
Cry1b
sly-u.5
for
CRY1a
osa-u.5
for
9270575
osa-u.5
for
4336008
osa-u.5
for
4329738
zma-u.5
for
100194126
zma-u.5
for
100502533


Ortholog ID: 1712
Species gma gma mtr mtr ppo ppo ath ath bra bra vvi vvi ghi ghi bna bna cit cit sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol CRY1a LOC100233234 LOC11428875 LOC25484452 LOC7486597 LOC18102473 CRY1 CRY2 CRY1 LOC103836576 LOC100254022 LOC100247664 LOC107929100 LOC107905111 LOC111197715 LOC106422131 LOC102630424 LOC102609249 CRY2 Cry1b LOC102580483 LOC102583141 LOC107813393 LOC107830603 LOC4329738 LOC9270575 LOC100502533 LOC100277533 LOC100136971 LOC100136972 LOC123426879 LOC123406235 LOC110436666 LOC110435145 LOC100839051 LOC100838321 CHLRE_06g295200v5
Function* cryptochrome 1 cryptochrome 2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 1 cryptochrome 2 cryptochrome circadian clock 1 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-2 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 cryptochrome 1b cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome-1 cryptochrome 2 uncharacterized LOC100277533 cryptochrome-1 cryptochrome-1 cryptochrome-1-like cryptochrome-1 cryptochrome-1-like cryptochrome-1-like cryptochrome-1 cryptochrome-1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00280 Valine, leucine and isoleucine degradation 2
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00900 Terpenoid backbone biosynthesis 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
vvi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 4
ghi00062 Fatty acid elongation 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
bna04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 3
sly00195 Photosynthesis 3
sly00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
sot00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 4
nta04712 Circadian rhythm - plant 2
nta04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 8
tae00053 Ascorbate and aldarate metabolism 3
tae01240 Biosynthesis of cofactors 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 5
bdi01200 Carbon metabolism 5
bdi04712 Circadian rhythm - plant 2
bdi00710 Carbon fixation by Calvin cycle 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04016 MAPK signaling pathway - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100233233 100233234 11428875 25484452 7486597 18102473 826470 839529 103838805 103836576 100254022 100247664 107929100 107905111 111197715 106422131 102630424 102609249 543596 543688 102580483 102583141 107813393 107830603 4329738 9270575 100502533 100277533 100136971 100136972 123426879 123406235 110436666 110435145 100839051 100838321 5727125
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