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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100242087   uncharacterized LOC100242087 
 vvi-r.5   100242087   uncharacterized LOC100242087 
 ath-u.5   AT1G20410   Pseudouridine synthase family protein 
 gma-u.5   100780683   tRNA pseudouridine synthase Pus10 
 bra-r.6   103872835   putative tRNA pseudouridine synthase Pus10 
 bra-r.6   103829430   putative tRNA pseudouridine synthase Pus10 
 ppo-u.5   7485629   uncharacterized LOC7485629 
 mtr-u.5   25482221   tRNA pseudouridine synthase Pus10 
 ghi-r.1   107937555   tRNA pseudouridine synthase Pus10 
 ghi-r.1   107905638   tRNA pseudouridine synthase Pus10 
 bna-r.1   111198586   tRNA pseudouridine synthase Pus10-like 
 bna-r.1   106407346   tRNA pseudouridine synthase Pus10 
 bna-r.1   106358237   tRNA pseudouridine synthase Pus10-like 
 cit-r.1   102627927   uncharacterized LOC102627927 
 sly-u.5   101251773   uncharacterized LOC101251773 
 sot-r.1   102587777   putative tRNA pseudouridine synthase Pus10 
 nta-r.1   107781503   uncharacterized LOC107781503 
 osa-u.5   4336659   uncharacterized LOC4336659 
 zma-u.5   100193157   Pseudouridine synthase family protein 
 tae-r.2   123190071   tRNA pseudouridine synthase Pus10 
 tae-r.2   123054181   tRNA pseudouridine synthase Pus10 
 tae-r.2   123046326   tRNA pseudouridine synthase Pus10 
 hvu-r.1   123427514   tRNA pseudouridine synthase Pus10 
 sbi-r.1   8056600   putative tRNA pseudouridine synthase Pus10 
 bdi-r.1   100822088   putative tRNA pseudouridine synthase Pus10 
 cre-r.1   CHLRE_12g506900v5   uncharacterized protein 

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Top 50 coexpressed genes to 100242087 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100242087 (vvi-u.5 coexpression data)

CoexMap"100242087"


vviLOC100242087 | Entrez gene ID : 100242087      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 1 2 3 1 1 1 1 1 1 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031119 [list] [network] tRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (18 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1286 genes)  IEA  
Protein XP_002284814.1 [sequence] [blastp]
XP_010664094.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  cysk_nucl 1,  cyto 1,  mito 1,  plas 1,  extr 1,  vacu 1,  E.R. 1,  E.R._vacu 1,  E.R._plas 1,  mito_plas 1,  cyto_E.R. 1,  cyto_plas 1  (predict for XP_002284814.1)
nucl 3,  cyto 3,  cyto_nucl 3,  mito 1,  plas 1,  vacu 1,  pero 1,  cysk 1,  golg 1,  golg_plas 1,  cysk_plas 1,  mito_plas 1  (predict for XP_010664094.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002284814.1)
other 8  (predict for XP_010664094.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100242087
vvi-r.5
for
100242087
ath-u.5
for
AT1G20410
gma-u.5
for
100780683
bra-r.6
for
103872835
bra-r.6
for
103829430
ppo-u.5
for
7485629
mtr-u.5
for
25482221
ghi-r.1
for
107937555
ghi-r.1
for
107905638
bna-r.1
for
111198586
bna-r.1
for
106407346
bna-r.1
for
106358237
cit-r.1
for
102627927
sly-u.5
for
101251773
sot-r.1
for
102587777
nta-r.1
for
107781503
osa-u.5
for
4336659
zma-u.5
for
100193157
tae-r.2
for
123190071
tae-r.2
for
123054181
tae-r.2
for
123046326
hvu-r.1
for
123427514
sbi-r.1
for
8056600
bdi-r.1
for
100822088
cre-r.1
for
CHLRE_12g506900v5


Ortholog ID: 9218
Species vvi ath gma bra bra ppo mtr ghi ghi bna bna bna cit sly sot nta osa zma tae tae tae hvu sbi bdi cre
Symbol LOC100242087 AT1G20410 LOC100780683 LOC103872835 LOC103829430 LOC7485629 LOC25482221 LOC107937555 LOC107905638 LOC111198586 LOC106407346 LOC106347283 LOC102627927 LOC101251773 LOC102587777 LOC107781503 LOC4336659 LOC100193157 LOC123190071 LOC123054181 LOC123046326 LOC123427514 LOC8056600 LOC100822088 CHLRE_12g506900v5
Function* uncharacterized LOC100242087 Pseudouridine synthase family protein tRNA pseudouridine synthase Pus10 putative tRNA pseudouridine synthase Pus10 putative tRNA pseudouridine synthase Pus10 uncharacterized LOC7485629 tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10-like tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10-like uncharacterized LOC102627927 uncharacterized LOC101251773 putative tRNA pseudouridine synthase Pus10 uncharacterized LOC107781503 uncharacterized LOC4336659 Pseudouridine synthase family protein tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10 tRNA pseudouridine synthase Pus10 putative tRNA pseudouridine synthase Pus10 putative tRNA pseudouridine synthase Pus10 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 12
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00240 Pyrimidine metabolism 3
bna00670 One carbon pool by folate 3
bna00790 Folate biosynthesis 3
bna01232 Nucleotide metabolism 3
bna01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 4
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae04146 Peroxisome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100242087 838630 100780683 103872835 103829430 7485629 25482221 107937555 107905638 111198586 106407346 106347283 102627927 101251773 102587777 107781503 4336659 100193157 123190071 123054181 123046326 123427514 8056600 100822088 5716489
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