ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100244495	uncharacterized LOC100244495
vvi-r.5	100244495	uncharacterized LOC100244495
vvi-m.5	100244495	uncharacterized LOC100244495
vvi-u.5	100258632	uncharacterized LOC100258632
ath-u.5	AT5G42000	ORMDL family protein
ath-u.5	AT1G01230	ORMDL family protein
gma-u.5	100802112	ORM1-like protein 3
gma-u.5	100813346	uncharacterized LOC100813346
gma-u.5	100527600	uncharacterized LOC100527600
bra-r.6	103850246	ORM1-like protein 3
bra-r.6	103843781	ORM1-like protein 2
ppo-u.5	7492789	uncharacterized LOC7492789
ppo-u.5	7457410	uncharacterized LOC7457410
ppo-u.5	7477831	uncharacterized protein C119.09c
mtr-u.5	25500650	ORM1-like protein 3
ghi-r.1	107945715	ORM1-like protein 2
ghi-r.1	107945909	ORM1-like protein 1
bna-r.1	111211046	ORM1-like protein 3
bna-r.1	106366727	ORM1-like protein 3
bna-r.1	106377363	ORM1-like protein 2
cit-r.1	102606829	hypothetical protein
cit-r.1	102617761	uncharacterized LOC102617761
cit-r.1	127901336	uncharacterized LOC127901336
sly-u.5	101248754	uncharacterized protein C119.09c
sly-u.5	101257898	uncharacterized LOC101257898
sly-u.5	101268781	uncharacterized LOC101268781
sot-r.1	102595624	ORM1-like protein 3
sot-r.1	102588736	ORM1-like protein 3
sot-r.1	102583143	uncharacterized protein C119.09c-like
nta-r.1	107786235	uncharacterized LOC107786235
nta-r.1	107791858	uncharacterized LOC107791858
nta-r.1	107806378	uncharacterized LOC107806378
osa-u.5	4343133	uncharacterized LOC4343133
osa-u.5	4330292	uncharacterized LOC4330292
osa-u.5	4336696	uncharacterized LOC4336696
zma-u.5	100282213	ORM1-like protein 2
zma-u.5	100282252	ORMDL family protein
zma-u.5	100274524	uncharacterized LOC100274524
tae-r.2	123054152	ORM1-like protein 3
tae-r.2	123046289	ORM1-like protein 3
hvu-r.1	123427479	ORM1-like protein 2
sbi-r.1	8059752	ORM1-like protein 3
sbi-r.1	8056612	ORM1-like protein 3
sbi-r.1	110434916	ORM1-like protein 3
bdi-r.1	100820923	ORM1-like protein 2
bdi-r.1	100828453	ORM1-like protein 2
bdi-r.1	100843135	ORM1-like protein 3
cre-r.1	CHLRE_12g516100v5	uncharacterized protein

Top 50 coexpressed genes to 100244495 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100244495 (vvi-u.5 coexpression data)

CoexMap"100244495"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0090156 [list] [network] intracellular sphingolipid homeostasis	(2 genes)	IEA
GO:1900060 [list] [network] negative regulation of ceramide biosynthetic process	(2 genes)	IEA
GO:0006672 [list] [network] ceramide metabolic process	(21 genes)	IEA

GO CC

GO:0005789 [list] [network] endoplasmic reticulum membrane

(183 genes)

IEA

GO MF

Protein

XP_002262624.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, cyto_E.R. 4, E.R. 1, mito 1, pero 1, cysk 1, golg 1

(predict for XP_002262624.1)

Subcellular
localization
TargetP

other 9

(predict for XP_002262624.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100244495	vvi-r.5 for 100244495	vvi-m.5 for 100244495	vvi-u.5 for 100258632	ath-u.5 for AT5G42000	ath-u.5 for AT1G01230	gma-u.5 for 100802112	gma-u.5 for 100813346	gma-u.5 for 100527600	bra-r.6 for 103850246	bra-r.6 for 103843781	ppo-u.5 for 7492789	ppo-u.5 for 7457410	ppo-u.5 for 7477831	mtr-u.5 for 25500650	ghi-r.1 for 107945715	ghi-r.1 for 107945909	bna-r.1 for 111211046	bna-r.1 for 106366727	bna-r.1 for 106377363	cit-r.1 for 102606829	cit-r.1 for 102617761	cit-r.1 for 127901336	sly-u.5 for 101248754	sly-u.5 for 101257898	sly-u.5 for 101268781	sot-r.1 for 102595624	sot-r.1 for 102588736	sot-r.1 for 102583143	nta-r.1 for 107786235	nta-r.1 for 107791858	nta-r.1 for 107806378	osa-u.5 for 4343133	osa-u.5 for 4330292	osa-u.5 for 4336696	zma-u.5 for 100282213	zma-u.5 for 100282252	zma-u.5 for 100274524	tae-r.2 for 123054152	tae-r.2 for 123046289	hvu-r.1 for 123427479	sbi-r.1 for 8059752	sbi-r.1 for 8056612	sbi-r.1 for 110434916	bdi-r.1 for 100820923	bdi-r.1 for 100828453	bdi-r.1 for 100843135	cre-r.1 for CHLRE_12g516100v5

Ortholog

Ortholog ID: 1882

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100244495

uncharacterized LOC100258632

ORMDL family protein

ORM1-like protein 3

uncharacterized LOC100813346

uncharacterized LOC100527600

ORM1-like protein 3

ORM1-like protein 2

uncharacterized LOC7457410

uncharacterized protein C119.09c

uncharacterized LOC7497507

ORM1-like protein 3

ORM1-like protein 2

ORM1-like protein 3

hypothetical protein

uncharacterized LOC102617761

uncharacterized LOC127901336

uncharacterized protein C119.09c

uncharacterized LOC101257898

uncharacterized LOC101268781

ORM1-like protein 3

uncharacterized protein C119.09c-like

uncharacterized LOC107809910

uncharacterized LOC107776882

uncharacterized LOC107761410

uncharacterized LOC4343133

uncharacterized LOC4330292

uncharacterized LOC4336696

ORM1-like protein 2

uncharacterized LOC100274524

uncharacterized LOC100273730

ORM1-like protein 3

ORM1-like protein 2

ORM1-like protein 3

ORM1-like protein 2

ORM1-like protein 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04130	SNARE interactions in vesicular transport	3
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3
ath04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	4
ppo00510	N-Glycan biosynthesis	3
ppo00513	Various types of N-glycan biosynthesis	3
ppo00190	Oxidative phosphorylation	2
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo04145	Phagosome	5
ppo04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04142	Lysosome	5
ghi00564	Glycerophospholipid metabolism	2
ghi00592	alpha-Linolenic acid metabolism	2
ghi00600	Sphingolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	5
sly04141	Protein processing in endoplasmic reticulum	2
sly03060	Protein export	2
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04136	Autophagy - other	2
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3
sly04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2
sot04142	Lysosome	2
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	3
nta04120	Ubiquitin mediated proteolysis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta00562	Inositol phosphate metabolism	2
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00510	N-Glycan biosynthesis	4
osa00513	Various types of N-glycan biosynthesis	4
osa04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00600	Sphingolipid metabolism	3
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	5
zma04382	Cornified envelope formation	5
zma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00600	Sphingolipid metabolism	4
zma04382	Cornified envelope formation	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3
tae04144	Endocytosis	3
tae04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03250	Viral life cycle - HIV-1	3
tae03272	Virion - Hepatitis viruses	3
tae04144	Endocytosis	3
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	7
cre03272	Virion - Hepatitis viruses	4
cre03250	Viral life cycle - HIV-1	3
cre04130	SNARE interactions in vesicular transport	2

Expression

Expression pattern

Entrez Gene ID^*

100244495

100258632

834205

839331

100802112

100813346

100527600

103850246

103843781

7457410

7477831

7497507

25500650

107911469

107952971

107954446

111211046

106366727

106370886

102606829

102617761

127901336

101248754

101257898

101268781

102595624

102588736

102583143

107809910

107776882

107761410

4343133

4330292

4336696

100282213

100274524

100273730

123054152

123190042

123427479

8059752

8056612

110434916

100820923

100828453

100843135

5728774

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Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	2	3	1	2	3	3	3	3	3	3	3	2	1	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100244495 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100244495 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**