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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100244562   pre-mRNA-processing factor 39-1 
 vvi-r.5   100244562   pre-mRNA-processing factor 39-1 
 vvi-m.5   100244562   pre-mRNA-processing factor 39-1 
 vvi-u.5   100243465   pre-mRNA-processing factor 39-2 
 ath-u.5   PRP39-2   Tetratricopeptide repeat (TPR)-like superfamily protein 
 ath-u.5   PRP39   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100810738   pre-mRNA-processing factor 39 
 gma-u.5   100780705   RNA polymerase II degradation factor 1 
 gma-u.5   100787373   pre-mRNA-processing factor 39 
 bra-r.6   103827735   pre-mRNA-processing factor 39 
 bra-r.6   103844289   pre-mRNA-processing factor 39 
 bra-r.6   103836592   pre-mRNA-processing factor 39 
 ppo-u.5   7461490   pre-mRNA-processing factor 39-1 
 ppo-u.5   7455695   pre-mRNA-processing factor 39-1 
 mtr-u.5   11430831   pre-mRNA-processing factor 39 
 mtr-u.5   11426586   uncharacterized LOC11426586 
 ghi-r.1   107905856   putative uncharacterized protein DDB_G0271606 
 ghi-r.1   107924034   pre-mRNA-processing factor 39 
 ghi-r.1   107924120   pre-mRNA-processing factor 39 
 bna-r.1   125594479   pre-mRNA-processing factor 39-2-like 
 bna-r.1   106370944   pre-mRNA-processing factor 39-2 
 bna-r.1   106400444   pre-mRNA-processing factor 39-2 
 cit-r.1   102607594   pre-mRNA-processing factor 39-2 
 cit-r.1   102614451   pre-mRNA-processing factor 39-1 
 sly-u.5   101258918   pre-mRNA-processing factor 39-2 
 sly-u.5   101247553   pre-mRNA-processing factor 39-1 
 sot-r.1   102585073   pre-mRNA-processing factor 39 
 sot-r.1   102590021   uncharacterized LOC102590021 
 nta-r.1   107764294   uncharacterized LOC107764294 
 nta-r.1   107789600   pre-mRNA-processing factor 39-1 
 nta-r.1   107798629   pre-mRNA-processing factor 39-1 
 osa-u.5   4345436   pre-mRNA-processing factor 39-2 
 osa-u.5   4332022   pre-mRNA-processing factor 39-1 
 zma-u.5   100383763   Tetratricopeptide repeat (TPR)-like superfamily protein 
 zma-u.5   103643333   uncharacterized LOC103643333 
 zma-u.5   100304428   uncharacterized LOC100304428 
 tae-r.2   123044657   uncharacterized LOC123044657 
 tae-r.2   123131708   pre-mRNA-processing factor 39 
 tae-r.2   123052534   uncharacterized LOC123052534 
 hvu-r.1   123406245   pre-mRNA-processing factor 39 
 hvu-r.1   123425869   polyhomeotic-proximal chromatin protein 
 hvu-r.1   123425870   uncharacterized LOC123425870 
 sbi-r.1   8081848   pre-mRNA-processing factor 39 
 sbi-r.1   8073505   putative uncharacterized protein DDB_G0271606 
 bdi-r.1   100842484   pre-mRNA-processing factor 39 
 bdi-r.1   100837794   uncharacterized LOC100837794 
 cre-r.1   CHLRE_16g670300v5   uncharacterized protein 

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Top 50 coexpressed genes to 100244562 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100244562 (vvi-u.5 coexpression data)

CoexMap"100244562"


vviLOC100244562 | Entrez gene ID : 100244562    
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 3 2 2 3 3 2 2 2 3 2 3 3 3 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000395 [list] [network] mRNA 5'-splice site recognition  (4 genes)  IEA  
GO:0006396 [list] [network] RNA processing  (548 genes)  IEA  
GO CC
GO:0000243 [list] [network] commitment complex  (10 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (17 genes)  IEA  
GO:0005685 [list] [network] U1 snRNP  (20 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_002272685.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 4,  plas 1,  pero 1,  golg 1,  golg_plas 1  (predict for XP_002272685.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002272685.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100244562
vvi-r.5
for
100244562
vvi-m.5
for
100244562
vvi-u.5
for
100243465
ath-u.5
for
PRP39-2
ath-u.5
for
PRP39
gma-u.5
for
100810738
gma-u.5
for
100780705
gma-u.5
for
100787373
bra-r.6
for
103827735
bra-r.6
for
103844289
bra-r.6
for
103836592
ppo-u.5
for
7461490
ppo-u.5
for
7455695
mtr-u.5
for
11430831
mtr-u.5
for
11426586
ghi-r.1
for
107905856
ghi-r.1
for
107924034
ghi-r.1
for
107924120
bna-r.1
for
125594479
bna-r.1
for
106370944
bna-r.1
for
106400444
cit-r.1
for
102607594
cit-r.1
for
102614451
sly-u.5
for
101258918
sly-u.5
for
101247553
sot-r.1
for
102585073
sot-r.1
for
102590021
nta-r.1
for
107764294
nta-r.1
for
107789600
nta-r.1
for
107798629
osa-u.5
for
4345436
osa-u.5
for
4332022
zma-u.5
for
100383763
zma-u.5
for
103643333
zma-u.5
for
100304428
tae-r.2
for
123044657
tae-r.2
for
123131708
tae-r.2
for
123052534
hvu-r.1
for
123406245
hvu-r.1
for
123425869
hvu-r.1
for
123425870
sbi-r.1
for
8081848
sbi-r.1
for
8073505
bdi-r.1
for
100842484
bdi-r.1
for
100837794
cre-r.1
for
CHLRE_16g670300v5


Ortholog ID: 2673
Species vvi vvi ath ath gma gma gma bra bra bra ppo ppo mtr mtr ghi ghi ghi bna bna bna cit cit sly sly sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi cre
Symbol LOC100244562 LOC100243465 PRP39-2 PRP39 LOC100810738 LOC100780705 LOC100787373 LOC103827735 LOC103844289 LOC103836592 LOC7461490 LOC7455695 LOC11430831 LOC11426586 LOC107905856 LOC107924034 LOC107893821 LOC125594479 LOC106411391 LOC125591572 LOC102607594 LOC102614451 LOC101258918 LOC101247553 LOC102585073 LOC102590021 LOC107764294 LOC107789600 LOC107789835 LOC4345436 LOC4332022 LOC100383763 LOC103643333 LOC100304428 LOC123044657 LOC123131708 LOC123135548 LOC123406245 LOC123425869 LOC123425870 LOC8081848 LOC8073505 LOC100842484 LOC100837794 CHLRE_16g670300v5
Function* pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 Tetratricopeptide repeat (TPR)-like superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein pre-mRNA-processing factor 39 RNA polymerase II degradation factor 1 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39 uncharacterized LOC11426586 putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39-2-like pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-2-like pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 pre-mRNA-processing factor 39 uncharacterized LOC102590021 uncharacterized LOC107764294 pre-mRNA-processing factor 39-1 uncharacterized LOC107789835 pre-mRNA-processing factor 39-2 pre-mRNA-processing factor 39-1 Tetratricopeptide repeat (TPR)-like superfamily protein uncharacterized LOC103643333 uncharacterized LOC100304428 uncharacterized LOC123044657 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 pre-mRNA-processing factor 39 polyhomeotic-proximal chromatin protein uncharacterized LOC123425870 pre-mRNA-processing factor 39 putative uncharacterized protein DDB_G0271606 pre-mRNA-processing factor 39 uncharacterized LOC100837794 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 7
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma04382 Cornified envelope formation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03420 Nucleotide excision repair 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
bra03013 Nucleocytoplasmic transport 2
bra03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00562 Inositol phosphate metabolism 2
ghi04070 Phosphatidylinositol signaling system 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
nta03450 Non-homologous end-joining 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04120 Ubiquitin mediated proteolysis 2
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
tae03013 Nucleocytoplasmic transport 2
tae03040 Spliceosome 2
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03040 Spliceosome 3
bdi03013 Nucleocytoplasmic transport 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100244562 100243465 834683 839314 100810738 100780705 100787373 103827735 103844289 103836592 7461490 7455695 11430831 11426586 107905856 107924034 107893821 125594479 106411391 125591572 102607594 102614451 101258918 101247553 102585073 102590021 107764294 107789600 107789835 4345436 4332022 100383763 103643333 100304428 123044657 123131708 123135548 123406245 123425869 123425870 8081848 8073505 100842484 100837794 5724786
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