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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100248931   29 kDa ribonucleoprotein A, chloroplastic 
 vvi-r.5   100248931   29 kDa ribonucleoprotein A, chloroplastic 
 vvi-m.5   100248931   29 kDa ribonucleoprotein A, chloroplastic 
 ath-u.5   AT4G09040   RNA-binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100806480   28 kDa ribonucleoprotein, chloroplastic 
 gma-u.5   100790439   RNA-binding protein CP31B, chloroplastic 
 ppo-u.5   7486573   28 kDa ribonucleoprotein, chloroplastic 
 mtr-u.5   11431177   28 kDa ribonucleoprotein, chloroplastic 
 sly-u.5   101266507   28 kDa ribonucleoprotein, chloroplastic 
 osa-u.5   4345863   RNA-binding protein CP33, chloroplastic 
 zma-u.5   100283883   uncharacterized LOC100283883 

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Top 50 coexpressed genes to 100248931 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100248931 (vvi-u.5 coexpression data)

CoexMap"100248931"


vviLOC100248931 | Entrez gene ID : 100248931      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005829 [list] [network] cytosol  (779 genes)  IEA  
GO MF
GO:0003729 [list] [network] mRNA binding  (233 genes)  IEA  
Protein XP_002285735.1 [sequence] [blastp]
XP_010664354.1 [sequence] [blastp]
XP_010664355.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4  (predict for XP_002285735.1)
chlo 6,  nucl 4  (predict for XP_010664354.1)
chlo 6,  nucl 4  (predict for XP_010664355.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002285735.1)
chlo 9  (predict for XP_010664354.1)
chlo 9  (predict for XP_010664355.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100248931
vvi-r.5
for
100248931
vvi-m.5
for
100248931
ath-u.5
for
AT4G09040
gma-u.5
for
100806480
gma-u.5
for
100790439
ppo-u.5
for
7486573
mtr-u.5
for
11431177
sly-u.5
for
101266507
osa-u.5
for
4345863
zma-u.5
for
100283883


Ortholog ID: 10846
Species vvi ath gma gma ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC100248931 AT4G09040 LOC100806480 LOC100790439 LOC7486573 LOC11431177 LOC107917079 LOC107921121 LOC106422136 LOC106360973 LOC102615204 LOC101266507 LOC102590165 LOC107798585 LOC107785853 LOC4345863 LOC100283883 LOC123144811 LOC123137455 LOC123403494 LOC8055386 LOC100839716
Function* 29 kDa ribonucleoprotein A, chloroplastic RNA-binding (RRM/RBD/RNP motifs) family protein 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP31B, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic-like 30S ribosomal protein 2, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic 28 kDa ribonucleoprotein, chloroplastic-like RNA-binding protein CP33, chloroplastic uncharacterized LOC100283883 RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic RNA-binding protein CP33, chloroplastic-like RNA-binding protein CP33, chloroplastic 29 kDa ribonucleoprotein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 7
gma00860 Porphyrin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo00860 Porphyrin metabolism 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00650 Butanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 9
cit00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae03015 mRNA surveillance pathway 3
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 4
tae01240 Biosynthesis of cofactors 4
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 3
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100248931 826483 100806480 100790439 7486573 11431177 107917079 107921121 106422136 106360973 102615204 101266507 102590165 107798585 107785853 4345863 100283883 123144811 123137455 123403494 8055386 100839716
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