ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
vvi-u.5	100250615	L-lactate dehydrogenase A
vvi-r.5	100250615	L-lactate dehydrogenase A
ath-u.5	AT4G17260	Lactate/malate dehydrogenase family protein
gma-u.5	100818856	L-lactate dehydrogenase B
gma-u.5	100814897	L-lactate dehydrogenase B
gma-u.5	100803035	L-lactate dehydrogenase A
ppo-u.5	18093976	L-lactate dehydrogenase B
mtr-u.5	11406365	L-lactate dehydrogenase A
mtr-u.5	11427630	L-lactate dehydrogenase B
sly-u.5	ldh2	L-lactate dehydrogenase
sly-u.5	ldh1	L-lactate dehydrogenase
osa-u.5	4328012	L-lactate dehydrogenase A
osa-u.5	4339856	L-lactate dehydrogenase B
zma-u.5	100282503	lactate dehydrogenase1
zma-u.5	100193279	Lactate/malate dehydrogenase family protein

Top 50 coexpressed genes to 100250615 (vvi-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100250615 (vvi-u.5 coexpression data)

CoexMap"100250615"

[Cytoscape]

Annotation

functional annotation

KEGG

vvi00010 [list] [network] Glycolysis / Gluconeogenesis (119 genes)

vvi00270 [list] [network] Cysteine and methionine metabolism (109 genes)

vvi00620 [list] [network] Pyruvate metabolism (103 genes)

vvi00640 [list] [network] Propanoate metabolism (45 genes)

GO BP

GO:0019752 [list] [network] carboxylic acid metabolic process

(524 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4496 genes)

IEA

GO MF

GO:0004459 [list] [network] L-lactate dehydrogenase (NAD+) activity

(2 genes)

IEA

Protein

XP_019080422.1 [sequence] [blastp]
XP_059589635.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, cyto 1, mito 1	(predict for XP_019080422.1)
chlo 9, cyto 1, mito 1	(predict for XP_059589635.1)

Subcellular
localization
TargetP

other 4, chlo 3	(predict for XP_019080422.1)
other 4, chlo 3	(predict for XP_059589635.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100250615	vvi-r.5 for 100250615	ath-u.5 for AT4G17260	gma-u.5 for 100818856	gma-u.5 for 100814897	gma-u.5 for 100803035	ppo-u.5 for 18093976	mtr-u.5 for 11406365	mtr-u.5 for 11427630	sly-u.5 for ldh2	sly-u.5 for ldh1	osa-u.5 for 4328012	osa-u.5 for 4339856	zma-u.5 for 100282503	zma-u.5 for 100193279

Ortholog

Ortholog ID: 4102

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ldh2

ldh1

LDH-2

Function^*

L-lactate dehydrogenase A

Lactate/malate dehydrogenase family protein

L-lactate dehydrogenase B

L-lactate dehydrogenase A

L-lactate dehydrogenase B

L-lactate dehydrogenase B-like

L-lactate dehydrogenase B

L-lactate dehydrogenase

L-lactate dehydrogenase B

lactate dehydrogenase-2

L-lactate dehydrogenase B

L-lactate dehydrogenase B-like

L-lactate dehydrogenase A

L-lactate dehydrogenase B

lactate dehydrogenase1

Lactate/malate dehydrogenase family protein

L-lactate dehydrogenase A

L-lactate dehydrogenase B

L-lactate dehydrogenase

L-lactate dehydrogenase B

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00330	Arginine and proline metabolism	3
vvi00250	Alanine, aspartate and glutamate metabolism	2
vvi00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00010	Glycolysis / Gluconeogenesis	4
ath00620	Pyruvate metabolism	3
ath01200	Carbon metabolism	3
ath01230	Biosynthesis of amino acids	3
ath00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	12
gma01200	Carbon metabolism	6
gma00030	Pentose phosphate pathway	4
gma01230	Biosynthesis of amino acids	4
gma00710	Carbon fixation by Calvin cycle	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00520	Amino sugar and nucleotide sugar metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2
bra00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00010	Glycolysis / Gluconeogenesis	7
bra01200	Carbon metabolism	6
bra01230	Biosynthesis of amino acids	6
bra00030	Pentose phosphate pathway	5
bra00051	Fructose and mannose metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04814	Motor proteins	4
ppo00053	Ascorbate and aldarate metabolism	3
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo01240	Biosynthesis of cofactors	3
ppo01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00010	Glycolysis / Gluconeogenesis	6
mtr00620	Pyruvate metabolism	5
mtr00071	Fatty acid degradation	3
mtr00350	Tyrosine metabolism	3
mtr00592	alpha-Linolenic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	4
ghi00270	Cysteine and methionine metabolism	4
ghi00620	Pyruvate metabolism	4
ghi00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	4
bna00270	Cysteine and methionine metabolism	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	4
bna00270	Cysteine and methionine metabolism	4
bna00620	Pyruvate metabolism	4
bna00640	Propanoate metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	4
cit00010	Glycolysis / Gluconeogenesis	4
cit00360	Phenylalanine metabolism	2
cit04075	Plant hormone signal transduction	2
cit00941	Flavonoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly00510	N-Glycan biosynthesis	3
sly00513	Various types of N-glycan biosynthesis	3
sly04016	MAPK signaling pathway - plant	2
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00480	Glutathione metabolism	3
sly01250	Biosynthesis of nucleotide sugars	2
sly00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	4
sot04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot04136	Autophagy - other	4
sot04382	Cornified envelope formation	4
sot00510	N-Glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00480	Glutathione metabolism	6
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
nta01230	Biosynthesis of amino acids	4
nta00940	Phenylpropanoid biosynthesis	4
nta00514	Other types of O-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00010	Glycolysis / Gluconeogenesis	7
nta01230	Biosynthesis of amino acids	7
nta01200	Carbon metabolism	5
nta03018	RNA degradation	3
nta04820	Cytoskeleton in muscle cells	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00904	Diterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	9
zma00620	Pyruvate metabolism	5
zma00270	Cysteine and methionine metabolism	3
zma00030	Pentose phosphate pathway	3
zma00051	Fructose and mannose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00010	Glycolysis / Gluconeogenesis	4
zma00270	Cysteine and methionine metabolism	3
zma00620	Pyruvate metabolism	3
zma00640	Propanoate metabolism	2
zma02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00010	Glycolysis / Gluconeogenesis	16
tae00620	Pyruvate metabolism	6
tae00071	Fatty acid degradation	4
tae00350	Tyrosine metabolism	4
tae00592	alpha-Linolenic acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00010	Glycolysis / Gluconeogenesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00270	Cysteine and methionine metabolism	3
sbi00620	Pyruvate metabolism	2
sbi00640	Propanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00250	Alanine, aspartate and glutamate metabolism	4
sbi00410	beta-Alanine metabolism	4
sbi00430	Taurine and hypotaurine metabolism	4
sbi00650	Butanoate metabolism	4
sbi00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00010	Glycolysis / Gluconeogenesis	6
bdi01200	Carbon metabolism	4
bdi01230	Biosynthesis of amino acids	4
bdi00620	Pyruvate metabolism	3
bdi00350	Tyrosine metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

100250615

827440

100814897

100818856

103868260

103860904

18093976

11406365

11427630

121203531

106445067

106425371

102614633

101263923

101252012

102604318

102577778

107803141

107777573

4328012

4339856

100282503

100193279

123131987

123402652

123429337

8085169

8085170

100846734

The preparation time of this page was 0.1 [sec].


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	1	3	1	2	2	2	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100250615 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100250615 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**