ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100250827	transcription initiation factor TFIID subunit 15b
vvi-r.5	100250827	transcription initiation factor TFIID subunit 15b
vvi-m.5	100250827	transcription initiation factor TFIID subunit 15b
ath-u.5	AT4G28990	RNA-binding protein-like protein
gma-u.5	100817587	uncharacterized LOC100817587
gma-u.5	100799651	RNA-binding protein EWS
bra-r.6	103853943	uncharacterized LOC103853943
ppo-u.5	18100420	uncharacterized LOC18100420
ppo-u.5	7476292	uncharacterized LOC7476292
mtr-u.5	11438547	uncharacterized LOC11438547
ghi-r.1	107939488	transcription initiation factor TFIID subunit 15
ghi-r.1	107932860	transcription initiation factor TFIID subunit 15
bna-r.1	125607223	serine/arginine repetitive matrix protein 1-like
bna-r.1	125610037	uncharacterized LOC125610037
cit-r.1	102624215	transcription initiation factor TFIID subunit 15
sly-u.5	101267115	uncharacterized LOC101267115
sot-r.1	102579998	RNA-binding protein EWS
nta-r.1	107798755	uncharacterized LOC107798755
nta-r.1	107811343	uncharacterized LOC107811343
osa-u.5	4328998	uncharacterized LOC4328998
osa-u.5	4340930	uncharacterized LOC4340930
zma-u.5	100280706	uncharacterized LOC100280706
tae-r.2	123147845	serine/arginine repetitive matrix protein 1
tae-r.2	123160704	serine/arginine repetitive matrix protein 1
tae-r.2	123166618	serine/arginine repetitive matrix protein 1
hvu-r.1	123413391	serine/arginine repetitive matrix protein 1
sbi-r.1	8060119	serine/arginine repetitive matrix protein 1
bdi-r.1	100846488	TATA-binding protein-associated factor 2N

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1359 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2597 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(115 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1286 genes)	IEA

Protein

XP_002284247.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, extr 1, pero 1, cyto_pero 1

(predict for XP_002284247.1)

Subcellular
localization
TargetP

other 6

(predict for XP_002284247.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100250827	vvi-r.5 for 100250827	vvi-m.5 for 100250827	ath-u.5 for AT4G28990	gma-u.5 for 100817587	gma-u.5 for 100799651	bra-r.6 for 103853943	ppo-u.5 for 18100420	ppo-u.5 for 7476292	mtr-u.5 for 11438547	ghi-r.1 for 107939488	ghi-r.1 for 107932860	bna-r.1 for 125607223	bna-r.1 for 125610037	cit-r.1 for 102624215	sly-u.5 for 101267115	sot-r.1 for 102579998	nta-r.1 for 107798755	nta-r.1 for 107811343	osa-u.5 for 4328998	osa-u.5 for 4340930	zma-u.5 for 100280706	tae-r.2 for 123147845	tae-r.2 for 123160704	tae-r.2 for 123166618	hvu-r.1 for 123413391	sbi-r.1 for 8060119	bdi-r.1 for 100846488

Ortholog

Ortholog ID: 7680

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

transcription initiation factor TFIID subunit 15b

RNA-binding protein-like protein

uncharacterized LOC100817587

RNA-binding protein EWS

uncharacterized LOC103853943

uncharacterized LOC18100420

uncharacterized LOC7476292

uncharacterized LOC11438547

transcription initiation factor TFIID subunit 15

serine/arginine repetitive matrix protein 1-like

uncharacterized LOC125610037

pollen-specific leucine-rich repeat extensin-like protein 3

transcription initiation factor TFIID subunit 15

uncharacterized LOC101267115

RNA-binding protein EWS

uncharacterized LOC107798755

uncharacterized LOC107811343

uncharacterized LOC4328998

uncharacterized LOC4340930

uncharacterized LOC100280706

serine/arginine repetitive matrix protein 1

TATA-binding protein-associated factor 2N

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	7
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	3
bra03040	Spliceosome	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	6
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03013	Nucleocytoplasmic transport	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna03013	Nucleocytoplasmic transport	4
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	5
bna03018	RNA degradation	4
bna03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	6
bna03013	Nucleocytoplasmic transport	4
bna03440	Homologous recombination	2
bna03460	Fanconi anemia pathway	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2
sly03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta03013	Nucleocytoplasmic transport	4
nta03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	7
bdi03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

100250827

829020

100817587

100799651

103853943

18100420

7476292

11438547

107939488

107932860

125607223

125610037

106407436

102624215

101267115

102579998

107798755

107811343

4328998

4340930

100280706

123147845

123160704

123166618

123413391

8060119

100846488

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100250827 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100250827 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	1	2	1	2	1	2	2	1	1	1	2	2	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100250827 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100250827 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**