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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100253367   116 kDa U5 small nuclear ribonucleoprotein component-like 
 vvi-r.5   100253367   116 kDa U5 small nuclear ribonucleoprotein component-like 
 vvi-m.5   100253367   116 kDa U5 small nuclear ribonucleoprotein component-like 
 ath-u.5   AT5G25230   Ribosomal protein S5/Elongation factor G/III/V family protein 
 ath-u.5   MEE5   Ribosomal protein S5/Elongation factor G/III/V family protein 
 gma-u.5   100783191   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 gma-u.5   100782529   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 ppo-u.5   7489480   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 ppo-u.5   7455653   110 kDa U5 small nuclear ribonucleoprotein component CLO-like 
 mtr-u.5   11438189   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 sly-u.5   101252197   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 osa-u.5   4341492   110 kDa U5 small nuclear ribonucleoprotein component CLO 
 zma-u.5   103638709   116 kDa U5 small nuclear ribonucleoprotein component-like 

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Top 50 coexpressed genes to 100253367 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100253367 (vvi-u.5 coexpression data)

CoexMap"100253367"


vviLOC100253367 | Entrez gene ID : 100253367      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03040 [list] [network] Spliceosome (236 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (134 genes)  IEA  
GO CC
GO:0071007 [list] [network] U2-type catalytic step 2 spliceosome  (4 genes)  IEA  
GO:0046540 [list] [network] U4/U6 x U5 tri-snRNP complex  (20 genes)  IEA  
GO:0005829 [list] [network] cytosol  (779 genes)  IEA  
GO MF
GO:0030623 [list] [network] U5 snRNA binding  (2 genes)  IEA  
GO:0003746 [list] [network] translation elongation factor activity  (22 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (170 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (196 genes)  IEA  
Protein XP_002267199.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  cyto 3  (predict for XP_002267199.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002267199.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100253367
vvi-r.5
for
100253367
vvi-m.5
for
100253367
ath-u.5
for
AT5G25230
ath-u.5
for
MEE5
gma-u.5
for
100783191
gma-u.5
for
100782529
ppo-u.5
for
7489480
ppo-u.5
for
7455653
mtr-u.5
for
11438189
sly-u.5
for
101252197
osa-u.5
for
4341492
zma-u.5
for
103638709


Ortholog ID: 7353
Species vvi ath ath gma gma bra ppo ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol LOC100253367 MEE5 AT5G25230 LOC100783191 LOC100782529 LOC103875457 LOC7455653 LOC7489480 LOC11438189 LOC107889174 LOC107891521 LOC106365705 LOC106369330 LOC102615488 LOC101252197 LOC102588627 LOC107773820 LOC107800224 LOC4341492 LOC103638709 LOC123148229 LOC123163862 LOC123407029 LOC8065086 LOC100834476 CHLRE_17g737250v5
Function* 116 kDa U5 small nuclear ribonucleoprotein component-like Ribosomal protein S5/Elongation factor G/III/V family protein Ribosomal protein S5/Elongation factor G/III/V family protein 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO-like 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO-like 110 kDa U5 small nuclear ribonucleoprotein component CLO-like 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 116 kDa U5 small nuclear ribonucleoprotein component 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO-like 110 kDa U5 small nuclear ribonucleoprotein component CLO 116 kDa U5 small nuclear ribonucleoprotein component-like 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO-like 110 kDa U5 small nuclear ribonucleoprotein component CLO 110 kDa U5 small nuclear ribonucleoprotein component CLO uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi03040 Spliceosome 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi00785 Lipoic acid metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03015 mRNA surveillance pathway 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03040 Spliceosome 4
ath00970 Aminoacyl-tRNA biosynthesis 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00230 Purine metabolism 2
gma01232 Nucleotide metabolism 2
gma03008 Ribosome biogenesis in eukaryotes 2
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03013 Nucleocytoplasmic transport 4
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
ppo01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 2
mtr03430 Mismatch repair 2
mtr03040 Spliceosome 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
ghi00310 Lysine degradation 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 11
bna03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 11
bna03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit00510 N-Glycan biosynthesis 3
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03013 Nucleocytoplasmic transport 3
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
sot00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03008 Ribosome biogenesis in eukaryotes 2
nta00230 Purine metabolism 2
nta03040 Spliceosome 2
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 8
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 9
tae03040 Spliceosome 5
tae03015 mRNA surveillance pathway 2
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu03040 Spliceosome 3
hvu03030 DNA replication 2
hvu03420 Nucleotide excision repair 2
hvu03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03013 Nucleocytoplasmic transport 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
bdi03013 Nucleocytoplasmic transport 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 10
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100253367 837131 832594 100783191 100782529 103875457 7455653 7489480 11438189 107889174 107891521 106365705 106369330 102615488 101252197 102588627 107773820 107800224 4341492 103638709 123148229 123163862 123407029 8065086 100834476 5725132
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