ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100254291	uncharacterized LOC100254291
vvi-r.5	100254291	uncharacterized LOC100254291
vvi-m.5	100254291	uncharacterized LOC100254291
vvi-u.5	100249193	uncharacterized LOC100249193
ath-u.5	AT3G13230	RNA-binding KH domain-containing protein
gma-u.5	100788055	RNA-binding protein pno1-like
gma-u.5	100784865	RNA-binding protein pno1
gma-u.5	102659733	RNA-binding protein pno1
bra-r.6	103870187	RNA-binding protein PNO1
ppo-u.5	7457657	uncharacterized LOC7457657
ppo-u.5	18103541	uncharacterized LOC18103541
mtr-u.5	11444321	RNA-binding protein pno1
ghi-r.1	107931076	RNA-binding protein pno1
ghi-r.1	107920380	RNA-binding protein pno1
ghi-r.1	107903381	RNA-binding protein pno1
bna-r.1	106452336	RNA-binding protein PNO1-like
bna-r.1	106372550	RNA-binding protein PNO1
cit-r.1	102629188	uncharacterized LOC102629188
cit-r.1	102614183	uncharacterized LOC102614183
sly-u.5	101268583	uncharacterized LOC101268583
sot-r.1	102579439	RNA-binding protein pno1
nta-r.1	107818006	uncharacterized LOC107818006
nta-r.1	107807302	uncharacterized LOC107807302
osa-u.5	107276702	uncharacterized LOC107276702
osa-u.5	4331393	uncharacterized LOC4331393
zma-u.5	100283335	partner of Nob1
zma-u.5	100274503	uncharacterized LOC100274503
tae-r.2	123060774	RNA-binding protein pno1
tae-r.2	123077856	RNA-binding protein pno1
tae-r.2	123069341	RNA-binding protein pno1
hvu-r.1	123447844	RNA-binding protein pno1
sbi-r.1	8082379	RNA-binding protein pno1
bdi-r.1	100830709	RNA-binding protein pno1
cre-r.1	CHLRE_12g549700v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005730 [list] [network] nucleolus

(170 genes)

IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1286 genes)

IEA

Protein

XP_002272565.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, cysk 3, golg 2, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1

(predict for XP_002272565.1)

Subcellular
localization
TargetP

other 7, chlo 6

(predict for XP_002272565.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100254291	vvi-r.5 for 100254291	vvi-m.5 for 100254291	vvi-u.5 for 100249193	ath-u.5 for AT3G13230	gma-u.5 for 100788055	gma-u.5 for 100784865	gma-u.5 for 102659733	bra-r.6 for 103870187	ppo-u.5 for 7457657	ppo-u.5 for 18103541	mtr-u.5 for 11444321	ghi-r.1 for 107931076	ghi-r.1 for 107920380	ghi-r.1 for 107903381	bna-r.1 for 106452336	bna-r.1 for 106372550	cit-r.1 for 102629188	cit-r.1 for 102614183	sly-u.5 for 101268583	sot-r.1 for 102579439	nta-r.1 for 107818006	nta-r.1 for 107807302	osa-u.5 for 107276702	osa-u.5 for 4331393	zma-u.5 for 100283335	zma-u.5 for 100274503	tae-r.2 for 123060774	tae-r.2 for 123077856	tae-r.2 for 123069341	hvu-r.1 for 123447844	sbi-r.1 for 8082379	bdi-r.1 for 100830709	cre-r.1 for CHLRE_12g549700v5

Ortholog

Ortholog ID: 6552

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC100254291

uncharacterized LOC100249193

RNA-binding KH domain-containing protein

RNA-binding protein pno1-like

RNA-binding protein pno1

RNA-binding protein PNO1

uncharacterized LOC7457657

uncharacterized LOC18103541

RNA-binding protein pno1

RNA-binding protein PNO1-like

RNA-binding protein PNO1

uncharacterized LOC102629188

uncharacterized LOC102614183

uncharacterized LOC101268583

RNA-binding protein pno1

uncharacterized LOC107818006

uncharacterized LOC107807302

uncharacterized LOC107276702

uncharacterized LOC4331393

partner of Nob1

uncharacterized LOC100274503

RNA-binding protein pno1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03020	RNA polymerase	2
ath03008	Ribosome biogenesis in eukaryotes	2
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	7
gma03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	6
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi04626	Plant-pathogen interaction	2
ghi03030	DNA replication	2
ghi03430	Mismatch repair	2
ghi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00230	Purine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00230	Purine metabolism	2
bna01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	2
cit03010	Ribosome	2
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	4
osa03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	3

Expression

Expression pattern

Entrez Gene ID^*

100254291

100249193

820521

100788055

100784865

102659733

103870187

7457657

18103541

11444321

107931076

107903381

107895162

106452336

106372550

102629188

102614183

101268583

102579439

107818006

107807302

107276702

4331393

100283335

100274503

123060774

123077856

123069341

123447844

8082379

100830709

5719646

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100254291 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100254291 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	bra	ppo	mtr	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	1	3	1	2	1	3	2	2	1	1	2	2	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100254291 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100254291 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**