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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100254543   F-box/LRR-repeat protein 4 
 vvi-r.5   100254543   F-box/LRR-repeat protein 4 
 ath-u.5   AT4G15475   F-box/RNI-like superfamily protein 
 gma-u.5   100816140   F-box/LRR-repeat protein 4 
 gma-u.5   100812999   F-box/LRR-repeat protein 4 
 gma-u.5   100777126   F-box/LRR-repeat protein 4 
 mtr-u.5   11446125   F-box/LRR-repeat protein 4 
 sly-u.5   101264732   F-box/LRR-repeat protein 4 
 osa-u.5   4348113   F-box/LRR-repeat protein 4 
 osa-u.5   4351003   F-box/LRR-repeat protein 4 
 zma-u.5   100382166   uncharacterized LOC100382166 

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Top 50 coexpressed genes to 100254543 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100254543 (vvi-u.5 coexpression data)

CoexMap"100254543"


vviLOC100254543 | Entrez gene ID : 100254543      
Species vvi ath gma mtr sly osa zma tae hvu ghi bdi cit bra cre sbi ppo bna nta sot
Paralog 2 1 3 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process  (57 genes)  IEA  
GO CC
GO:0019005 [list] [network] SCF ubiquitin ligase complex  (51 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4496 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4232 genes)  IEA  
Protein XP_010649842.1 [sequence] [blastp]
XP_010649843.1 [sequence] [blastp]
XP_059592812.1 [sequence] [blastp]
XP_059592813.1 [sequence] [blastp]
XP_059592814.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_010649842.1)
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_010649843.1)
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_059592812.1)
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_059592813.1)
nucl 6,  cyto_nucl 4,  cyto 1  (predict for XP_059592814.1)
Subcellular
localization
TargetP
other 7  (predict for XP_010649842.1)
other 7  (predict for XP_010649843.1)
other 7  (predict for XP_059592812.1)
other 7  (predict for XP_059592813.1)
other 7  (predict for XP_059592814.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100254543

.
vvi-r.5
for
100254543

.
ath-u.5
for
AT4G15475

.
gma-u.5
for
100816140

.
gma-u.5
for
100812999

.
gma-u.5
for
100777126

.
mtr-u.5
for
11446125

.
sly-u.5
for
101264732

.
osa-u.5
for
4348113

.
osa-u.5
for
4351003

.
zma-u.5
for
100382166

.


Ortholog ID: 9578
Species ath gma gma sly osa osa zma bra vvi mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G15475 LOC100816140 LOC100777126 LOC101264732 LOC4351003 LOC4348113 LOC100382166 LOC103860783 LOC100254543 LOC11446125 LOC123085891 LOC123091802 LOC123448457 LOC107929132 LOC121206395 LOC106440041 LOC106401790 CHLRE_14g624000v5 LOC8079163 LOC102605788 LOC102630803 LOC100843200 LOC107769148 LOC107806291
Function* F-box/RNI-like superfamily protein F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 uncharacterized LOC100382166 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4-like uncharacterized protein F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 F-box/LRR-repeat protein 4 uncharacterized LOC107769148 uncharacterized LOC107806291
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04144 Endocytosis 2
sly04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 2
osa03410 Base excision repair 2
osa03420 Nucleotide excision repair 2
osa03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae00510 N-Glycan biosynthesis 3
tae00513 Various types of N-glycan biosynthesis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 4
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827219 100816140 100777126 101264732 4351003 4348113 100382166 103860783 100254543 11446125 123085891 123091802 123448457 107929132 121206395 106440041 106401790 5718309 8079163 102605788 102630803 100843200 107769148 107806291
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