ATTED-II : GeneCoexpression result

Species	Gene	Description
vvi-u.5	100265278	uncharacterized LOC100265278
vvi-r.5	100265278	uncharacterized LOC100265278
ath-u.5	AT1G15420	WD repeat protein
gma-u.5	100820265	WD repeat-containing protein 43
gma-u.5	100799236	WD repeat-containing protein 43
gma-u.5	100796828	WD repeat-containing protein 43
ppo-u.5	7475717	polyubiquitin 11
ppo-u.5	18094734	uncharacterized LOC18094734
mtr-u.5	25491339	WD repeat-containing protein 43
sly-u.5	101255780	uncharacterized LOC101255780
osa-u.5	4352882	U3 small nucleolar RNA-associated protein 5
osa-u.5	4326248	uncharacterized LOC4326248
zma-u.5	100193178	uncharacterized LOC100193178

functional annotation

KEGG

vvi03008 [list] [network] Ribosome biogenesis in eukaryotes (287 genes)

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4232 genes)

IEA

Protein

XP_010654750.1 [sequence] [blastp]
XP_010654751.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, chlo 3, cyto 3	(predict for XP_010654750.1)
cyto 6, chlo 2, nucl 2	(predict for XP_010654751.1)

Subcellular
localization
TargetP

other 8	(predict for XP_010654750.1)
other 7	(predict for XP_010654751.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	vvi-u.5 for 100265278	vvi-r.5 for 100265278	ath-u.5 for AT1G15420	gma-u.5 for 100820265	gma-u.5 for 100799236	gma-u.5 for 100796828	ppo-u.5 for 7475717	ppo-u.5 for 18094734	mtr-u.5 for 25491339	sly-u.5 for 101255780	osa-u.5 for 4352882	osa-u.5 for 4326248	zma-u.5 for 100193178

Ortholog ID: 5008

Species

vvi

ath

gma

bra

ppo

mtr

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC100265278

WD repeat protein

WD repeat-containing protein 43

polyubiquitin 11

uncharacterized LOC18094734

WD repeat-containing protein 43

uncharacterized LOC102614663

uncharacterized LOC101255780

WD repeat-containing protein 43

uncharacterized LOC107793214

uncharacterized LOC107782652

uncharacterized LOC4326248

U3 small nucleolar RNA-associated protein 5

uncharacterized LOC100193178

uncharacterized LOC123078674

uncharacterized LOC123070230

uncharacterized WD repeat-containing protein alr2800-like

WD repeat-containing protein 43-like

uncharacterized LOC8069011

U3 small nucleolar RNA-associated protein 5

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5
ppo03015	mRNA surveillance pathway	2
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3
bna00100	Steroid biosynthesis	2
bna00561	Glycerolipid metabolism	2
bna00564	Glycerophospholipid metabolism	2
bna00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta00230	Purine metabolism	2
nta01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	4
zma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03420	Nucleotide excision repair	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00900	Terpenoid backbone biosynthesis	3
tae00240	Pyrimidine metabolism	3
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	2
tae00920	Sulfur metabolism	2
tae04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03013	Nucleocytoplasmic transport	2
hvu03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	12
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	3
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	8
bdi03008	Ribosome biogenesis in eukaryotes	2

Expression

Expression pattern

Entrez Gene ID^*

100265278

838113

100799236

100820265

103872336

7475717

18094734

25491339

107944969

107906478

106402822

102614663

101255780

102591528

107793214

107782652

4326248

4352882

100193178

123078674

123070230

123443980

123395145

8069011

100837506

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 100265278 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100265278 (vvi-u.5 coexpression data)


Species	vvi	ath	gma	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	2	1	3	2	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100265278 (vvi-u.5 coexpression data)

Top 50 enrichment test to 100265278 (vvi-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**