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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100265542   threonine--tRNA ligase, mitochondrial 1 
 vvi-r.5   100265542   threonine--tRNA ligase, mitochondrial 1 
 vvi-m.5   100265542   threonine--tRNA ligase, mitochondrial 1 
 vvi-u.5   100258303   threonine--tRNA ligase, mitochondrial 1 
 ath-u.5   AT5G26830   Threonyl-tRNA synthetase 
 gma-u.5   100812652   threonine--tRNA ligase, mitochondrial 1 
 gma-u.5   100802879   threonine--tRNA ligase, mitochondrial 1 
 bra-r.6   103837192   threonine--tRNA ligase, mitochondrial 1 
 ppo-u.5   7471476   threonine--tRNA ligase, mitochondrial 1 
 ppo-u.5   18102530   threonine--tRNA ligase, mitochondrial 1-like 
 mtr-u.5   11405640   threonine--tRNA ligase, mitochondrial 1 
 ghi-r.1   107945257   threonine--tRNA ligase, mitochondrial 1 
 ghi-r.1   107935514   threonine--tRNA ligase, mitochondrial 1 
 bna-r.1   106348710   threonine--tRNA ligase, mitochondrial 1 
 bna-r.1   106365869   threonine--tRNA ligase, mitochondrial 1 
 bna-r.1   106396274   threonine--tRNA ligase, mitochondrial 1-like 
 cit-r.1   102627861   threonine--tRNA ligase, mitochondrial 1 
 sly-u.5   101257168   threonine--tRNA ligase, mitochondrial 1 
 sly-u.5   101244106   threonine--tRNA ligase, mitochondrial 1-like 
 sot-r.1   102591931   threonine--tRNA ligase, mitochondrial 1-like 
 sot-r.1   102605285   threonine--tRNA ligase, mitochondrial 1-like 
 sot-r.1   102584652   threonine--tRNA ligase, mitochondrial 1-like 
 nta-r.1   107772352   threonine--tRNA ligase, mitochondrial 1 
 nta-r.1   107831509   threonine--tRNA ligase, mitochondrial 1 
 nta-r.1   107796714   threonine--tRNA ligase, mitochondrial 1 
 osa-u.5   4345200   threonine--tRNA ligase, mitochondrial 1 
 zma-u.5   103643444   threonine--tRNA ligase, mitochondrial 1 
 zma-u.5   103626016   threonine--tRNA ligase, mitochondrial-like 
 tae-r.2   123068568   threonine--tRNA ligase, mitochondrial 1 
 tae-r.2   123077106   threonine--tRNA ligase, mitochondrial 1 
 tae-r.2   123060089   threonine--tRNA ligase, mitochondrial 1 
 hvu-r.1   123442662   threonine--tRNA ligase, mitochondrial 1 
 sbi-r.1   8057195   threonine--tRNA ligase, mitochondrial 1 
 bdi-r.1   100821121   threonine--tRNA ligase, mitochondrial 1 
 cre-r.1   CHLRE_06g273300v5   uncharacterized protein 

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Top 50 coexpressed genes to 100265542 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100265542 (vvi-u.5 coexpression data)

CoexMap"100265542"


vviLOC100265542 | Entrez gene ID : 100265542      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 1 2 1 2 3 1 2 3 3 1 2 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00970 [list] [network] Aminoacyl-tRNA biosynthesis (494 genes)
GO BP
GO:0006435 [list] [network] threonyl-tRNA aminoacylation  (4 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (505 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (557 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4496 genes)  IEA  
GO MF
GO:0004829 [list] [network] threonine-tRNA ligase activity  (4 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2120 genes)  IEA  
Protein XP_002265302.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 4  (predict for XP_002265302.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002265302.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100265542
vvi-r.5
for
100265542
vvi-m.5
for
100265542
vvi-u.5
for
100258303
ath-u.5
for
AT5G26830
gma-u.5
for
100812652
gma-u.5
for
100802879
bra-r.6
for
103837192
ppo-u.5
for
7471476
ppo-u.5
for
18102530
mtr-u.5
for
11405640
ghi-r.1
for
107945257
ghi-r.1
for
107935514
bna-r.1
for
106348710
bna-r.1
for
106365869
bna-r.1
for
106396274
cit-r.1
for
102627861
sly-u.5
for
101257168
sly-u.5
for
101244106
sot-r.1
for
102591931
sot-r.1
for
102605285
sot-r.1
for
102584652
nta-r.1
for
107772352
nta-r.1
for
107831509
nta-r.1
for
107796714
osa-u.5
for
4345200
zma-u.5
for
103643444
zma-u.5
for
103626016
tae-r.2
for
123068568
tae-r.2
for
123077106
tae-r.2
for
123060089
hvu-r.1
for
123442662
sbi-r.1
for
8057195
bdi-r.1
for
100821121
cre-r.1
for
CHLRE_06g273300v5


Ortholog ID: 5847
Species vvi vvi ath gma gma bra ppo ppo mtr ghi ghi bna bna bna cit sly sly sot sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi cre
Symbol LOC100265542 LOC100258303 AT5G26830 LOC100812652 LOC100802879 LOC103837192 LOC7471476 LOC18102530 LOC11405640 LOC107945257 LOC107935514 LOC106348710 LOC106396274 LOC106440346 LOC102627861 LOC101257168 LOC101244106 LOC102591931 LOC102605285 LOC102584652 LOC107772352 LOC107831509 LOC107789064 LOC4345200 LOC103643444 LOC103626016 LOC123068568 LOC123077106 LOC123060089 LOC123442662 LOC8057195 LOC100821121 CHLRE_06g273300v5
Function* threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 Threonyl-tRNA synthetase threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial-like threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 threonine--tRNA ligase, mitochondrial 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 8
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi00970 Aminoacyl-tRNA biosynthesis 4
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 7
gma03008 Ribosome biogenesis in eukaryotes 3
gma04075 Plant hormone signal transduction 2
gma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 6
gma00190 Oxidative phosphorylation 4
gma01200 Carbon metabolism 2
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 8
ppo00020 Citrate cycle (TCA cycle) 3
ppo01200 Carbon metabolism 3
ppo00300 Lysine biosynthesis 3
ppo01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03460 Fanconi anemia pathway 2
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 7
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
cit00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 3
sly03013 Nucleocytoplasmic transport 3
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 3
sly04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot04626 Plant-pathogen interaction 2
sot04141 Protein processing in endoplasmic reticulum 2
sot04075 Plant hormone signal transduction 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03015 mRNA surveillance pathway 3
sot00970 Aminoacyl-tRNA biosynthesis 3
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 9
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 9
nta03018 RNA degradation 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 9
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 8
osa01230 Biosynthesis of amino acids 3
osa03013 Nucleocytoplasmic transport 2
osa03040 Spliceosome 2
osa00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 8
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 11
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 8
tae03013 Nucleocytoplasmic transport 4
tae03008 Ribosome biogenesis in eukaryotes 2
tae03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi00290 Valine, leucine and isoleucine biosynthesis 2
sbi00620 Pyruvate metabolism 2
sbi01210 2-Oxocarboxylic acid metabolism 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 6
cre01230 Biosynthesis of amino acids 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre00290 Valine, leucine and isoleucine biosynthesis 2
cre01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100265542 100258303 832741 100812652 100802879 103837192 7471476 18102530 11405640 107945257 107935514 106348710 106396274 106440346 102627861 101257168 101244106 102591931 102605285 102584652 107772352 107831509 107789064 4345200 103643444 103626016 123068568 123077106 123060089 123442662 8057195 100821121 5721795
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