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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100267754   large ribosomal subunit protein uL3c 
 vvi-r.5   100267754   large ribosomal subunit protein uL3c 
 vvi-m.5   100267754   large ribosomal subunit protein uL3c 
 ath-u.5   AT2G43030   Ribosomal protein L3 family protein 
 gma-u.5   100809897   50S ribosomal protein L3, chloroplastic-like 
 gma-u.5   100802392   50S ribosomal protein L3, chloroplastic 
 ppo-u.5   7493861   50S ribosomal protein L3, chloroplastic 
 mtr-u.5   11419287   50S ribosomal protein L3, chloroplastic 
 sly-u.5   101247532   large ribosomal subunit protein uL3c 
 osa-u.5   4328236   large ribosomal subunit protein uL3c 
 zma-u.5   100193892   50S ribosomal protein L3, chloroplastic-like 

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Top 50 coexpressed genes to 100267754 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100267754 (vvi-u.5 coexpression data)

CoexMap"100267754"


vviLOC100267754 | Entrez gene ID : 100267754      
Species vvi ath gma ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi03010 [list] [network] Ribosome (544 genes)
GO BP
GO:0006412 [list] [network] translation  (410 genes)  IEA  
GO CC
GO:0009941 [list] [network] chloroplast envelope  (95 genes)  IEA  
GO:0005840 [list] [network] ribosome  (293 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (288 genes)  IEA  
Protein XP_002271466.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002271466.2)
Subcellular
localization
TargetP
chlo 3  (predict for XP_002271466.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100267754

.
vvi-r.5
for
100267754

.
vvi-m.5
for
100267754

.
ath-u.5
for
AT2G43030

.
gma-u.5
for
100809897

.
gma-u.5
for
100802392

.
ppo-u.5
for
7493861

.
mtr-u.5
for
11419287

.
sly-u.5
for
101247532

.
osa-u.5
for
4328236

.
zma-u.5
for
100193892

.


Ortholog ID: 9435
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sot cit bdi nta nta
Symbol AT2G43030 LOC100802392 LOC100809897 LOC101247532 LOC4328236 LOC100193892 LOC103858043 LOC100267754 LOC7493861 LOC11419287 LOC123143690 LOC123136179 LOC123403412 LOC107893116 LOC107937726 LOC106388299 LOC125606861 CHLRE_48g761197v5 CHLRE_01g050316v5 LOC8057538 LOC102592271 LOC102625471 LOC100835651 LOC107801195 LOC107825047
Function* Ribosomal protein L3 family protein 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic-like large ribosomal subunit protein uL3c large ribosomal subunit protein uL3c 50S ribosomal protein L3, chloroplastic-like 50S ribosomal protein L3-1, chloroplastic large ribosomal subunit protein uL3c 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3-1, chloroplastic 50S ribosomal protein L3-1, chloroplastic uncharacterized protein uncharacterized protein 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic 50S ribosomal protein L3, chloroplastic large ribosomal subunit protein uL3c-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 14
bra00860 Porphyrin metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
mtr00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi00190 Oxidative phosphorylation 2
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 8
cre00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 10
bdi00860 Porphyrin metabolism 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 17
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818905 100802392 100809897 101247532 4328236 100193892 103858043 100267754 7493861 11419287 123143690 123136179 123403412 107893116 107937726 106388299 125606861 5726239 66052160 8057538 102592271 102625471 100835651 107801195 107825047
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