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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100268009   beta-carotene hydroxylase 2, chloroplastic 
 vvi-r.5   100268009   beta-carotene hydroxylase 2, chloroplastic 
 vvi-m.5   100268009   beta-carotene hydroxylase 2, chloroplastic 
 vvi-u.5   BCH1   beta-carotene hydroxylase 
 ath-u.5   BETA-OHASE 1   beta-hydroxylase 1 
 ath-u.5   BETA-OHASE 2   beta-carotene hydroxylase 2 
 gma-u.5   BCH3   beta-carotene hydroxylase BCH3 
 gma-u.5   BCH2   beta-carotene hydroxylase BCH2 
 gma-u.5   BCH4   beta-carotene hydroxylase 4 
 bra-r.6   BCH   beta-carotene 3-hydroxylase 1, chloroplastic 
 bra-r.6   103863442   beta-carotene 3-hydroxylase 1, chloroplastic 
 ppo-u.5   18106473   beta-carotene hydroxylase 2, chloroplastic 
 ppo-u.5   7468341   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   25496443   beta-carotene hydroxylase 2, chloroplastic 
 mtr-u.5   11424160   beta-carotene hydroxylase 2, chloroplastic 
 ghi-r.1   107947686   beta-carotene 3-hydroxylase, chloroplastic 
 ghi-r.1   107930284   beta-carotene hydroxylase 2, chloroplastic 
 ghi-r.1   107890752   beta-carotene hydroxylase 2, chloroplastic 
 bna-r.1   106347114   beta-carotene 3-hydroxylase 1, chloroplastic 
 bna-r.1   106442837   beta-carotene 3-hydroxylase 1, chloroplastic-like 
 cit-r.1   102578021   beta-carotene hydroxylase 
 sly-u.5   CrtR-b1   beta-carotene hydroxylase 
 sly-u.5   CrtR-b2   beta-carotene hydroxylase 
 sot-r.1   102591473   beta-carotene hydroxylase 1, chloroplastic 
 sot-r.1   102580250   beta-carotene hydroxylase 1, chloroplastic-like 
 sot-r.1   102582135   beta-carotene hydroxylase 2, chloroplastic 
 nta-r.1   107824034   beta-carotene hydroxylase 2, chloroplastic-like 
 nta-r.1   107822278   beta-carotene hydroxylase 2, chloroplastic-like 
 nta-r.1   107809222   beta-carotene hydroxylase 2, chloroplastic-like 
 osa-u.5   4349224   beta-carotene hydroxylase 2, chloroplastic 
 osa-u.5   4331460   beta-carotene hydroxylase 2, chloroplastic 
 zma-u.5   103631225   beta-carotene 3-hydroxylase, chloroplastic 
 zma-u.5   732825   beta-carotene hydroxylase 
 zma-u.5   732775   beta-carotene hydroxylase 
 tae-r.2   123189994   beta-carotene 3-hydroxylase, chloroplastic 
 tae-r.2   100415846   beta-carotene 3-hydroxylase, chloroplastic 
 tae-r.2   123046235   beta-carotene 3-hydroxylase, chloroplastic 
 hvu-r.1   123449828   beta-carotene 3-hydroxylase, chloroplastic-like 
 hvu-r.1   123430624   beta-carotene 3-hydroxylase, chloroplastic-like 
 sbi-r.1   8060428   beta-carotene hydroxylase 2, chloroplastic 
 sbi-r.1   8085716   beta-carotene 3-hydroxylase, chloroplastic 
 bdi-r.1   100837035   beta-carotene 3-hydroxylase, chloroplastic 
 bdi-r.1   100836591   beta-carotene 3-hydroxylase, chloroplastic 
 cre-r.1   CHLRE_04g215050v5   uncharacterized protein 

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Top 50 coexpressed genes to 100268009 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100268009 (vvi-u.5 coexpression data)

CoexMap"100268009"


vviLOC100268009 | Entrez gene ID : 100268009      
Species vvi ath gma bra ppo mtr ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 3 2 2 2 3 2 1 2 3 3 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG vvi00906 [list] [network] Carotenoid biosynthesis (39 genes)
GO BP
GO:0016123 [list] [network] xanthophyll biosynthetic process  (4 genes)  IEA  
GO:0016119 [list] [network] carotene metabolic process  (17 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (557 genes)  IEA  
GO MF
GO:0010291 [list] [network] beta-carotene 3-hydroxylase activity  (3 genes)  IEA  
GO:0005506 [list] [network] iron ion binding  (426 genes)  IEA  
Protein XP_002273581.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 2,  plas 1,  E.R. 1,  E.R._plas 1  (predict for XP_002273581.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002273581.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100268009
vvi-r.5
for
100268009
vvi-m.5
for
100268009
vvi-u.5
for
BCH1
ath-u.5
for
BETA-OHASE 1
ath-u.5
for
BETA-OHASE 2
gma-u.5
for
BCH3
gma-u.5
for
BCH2
gma-u.5
for
BCH4
bra-r.6
for
BCH
bra-r.6
for
103863442
ppo-u.5
for
18106473
ppo-u.5
for
7468341
mtr-u.5
for
25496443
mtr-u.5
for
11424160
ghi-r.1
for
107947686
ghi-r.1
for
107930284
ghi-r.1
for
107890752
bna-r.1
for
106347114
bna-r.1
for
106442837
cit-r.1
for
102578021
sly-u.5
for
CrtR-b1
sly-u.5
for
CrtR-b2
sot-r.1
for
102591473
sot-r.1
for
102580250
sot-r.1
for
102582135
nta-r.1
for
107824034
nta-r.1
for
107822278
nta-r.1
for
107809222
osa-u.5
for
4349224
osa-u.5
for
4331460
zma-u.5
for
103631225
zma-u.5
for
732825
zma-u.5
for
732775
tae-r.2
for
123189994
tae-r.2
for
100415846
tae-r.2
for
123046235
hvu-r.1
for
123449828
hvu-r.1
for
123430624
sbi-r.1
for
8060428
sbi-r.1
for
8085716
bdi-r.1
for
100837035
bdi-r.1
for
100836591
cre-r.1
for
CHLRE_04g215050v5


Ortholog ID: 2749
Species vvi vvi ath ath gma gma gma bra bra ppo ppo mtr mtr ghi ghi ghi bna bna bna cit sly sly sot sot sot nta nta nta osa osa zma zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC100268009 BCH1 BETA-OHASE 1 BETA-OHASE 2 BCH3 BCH2 BCH5 BCH LOC103863442 LOC18106473 LOC7468341 LOC25496443 LOC11424160 LOC107947686 LOC107890752 LOC121211198 LOC106347114 LOC106442837 LOC106406976 LOC102578021 CrtR-b1 CrtR-b2 LOC102591473 LOC102580250 LOC102582135 LOC107824034 LOC107809222 LOC107789701 LOC4349224 LOC4331460 LOC103631225 LOC732825 LOC732775 LOC100415846 LOC123046235 LOC123054106 LOC123449828 LOC123430624 LOC8060428 LOC8085716 LOC100837035 LOC100836591 CHLRE_04g215050v5
Function* beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase beta-hydroxylase 1 beta-carotene hydroxylase 2 beta-carotene hydroxylase BCH3 beta-carotene hydroxylase BCH2 beta-carotene hydroxylase 5 beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene 3-hydroxylase 1, chloroplastic-like beta-carotene 3-hydroxylase 1, chloroplastic beta-carotene hydroxylase beta-carotene hydroxylase beta-carotene hydroxylase beta-carotene hydroxylase 1, chloroplastic beta-carotene hydroxylase 1, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene hydroxylase beta-carotene hydroxylase beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene 3-hydroxylase, chloroplastic-like beta-carotene hydroxylase 2, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic beta-carotene 3-hydroxylase, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00350 Tyrosine metabolism 3
ath00270 Cysteine and methionine metabolism 2
ath00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ath00360 Phenylalanine metabolism 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 4
gma00900 Terpenoid backbone biosynthesis 4
gma00860 Porphyrin metabolism 3
gma00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 2
bra00053 Ascorbate and aldarate metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 5
ppo04016 MAPK signaling pathway - plant 4
ppo00906 Carotenoid biosynthesis 3
ppo00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 3
ghi04981 Folate transport and metabolism 3
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 4
ghi04075 Plant hormone signal transduction 4
ghi00051 Fructose and mannose metabolism 2
ghi00500 Starch and sucrose metabolism 2
ghi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi02010 ABC transporters 3
ghi04981 Folate transport and metabolism 3
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
bna04712 Circadian rhythm - plant 3
bna00740 Riboflavin metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 3
sly04075 Plant hormone signal transduction 2
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 3
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 9
nta04016 MAPK signaling pathway - plant 7
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 11
nta04016 MAPK signaling pathway - plant 9
nta00906 Carotenoid biosynthesis 2
nta02010 ABC transporters 2
nta04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00196 Photosynthesis - antenna proteins 4
osa00906 Carotenoid biosynthesis 2
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 6
osa04016 MAPK signaling pathway - plant 5
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 7
zma04016 MAPK signaling pathway - plant 6
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 7
zma00906 Carotenoid biosynthesis 4
zma00640 Propanoate metabolism 2
zma00785 Lipoic acid metabolism 2
zma01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 4
zma01240 Biosynthesis of cofactors 4
zma00051 Fructose and mannose metabolism 3
zma00520 Amino sugar and nucleotide sugar metabolism 3
zma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 10
tae04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae01240 Biosynthesis of cofactors 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
tae00350 Tyrosine metabolism 4
tae00360 Phenylalanine metabolism 4
tae00310 Lysine degradation 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100268009 100232875 828675 835334 547758 100785541 100813368 103861586 103863442 18106473 7468341 25496443 11424160 107947686 107890752 121211198 106347114 106442837 106406976 102578021 544133 544297 102591473 102580250 102582135 107824034 107809222 107789701 4349224 4331460 103631225 732825 732775 100415846 123046235 123054106 123449828 123430624 8060428 8085716 100837035 100836591 5724272
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