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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100272393   uncharacterized LOC100272393 
 zma-r.6   100272393   uncharacterized LOC100272393 
 zma-m.5   100272393   uncharacterized LOC100272393 
 osa-u.5   4332490   RNA pseudouridine synthase 5-like 
 ath-u.5   AT3G52260   Pseudouridine synthase family protein 
 gma-u.5   100810058   RNA pseudouridine synthase 5 
 sly-u.5   101246017   RNA pseudouridine synthase 5 
 vvi-u.5   100265032   RNA pseudouridine synthase 5 
 ppo-u.5   7457877   RNA pseudouridine synthase 5 
 mtr-u.5   11409136   RNA pseudouridine synthase 5 

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Top 50 coexpressed genes to 100272393 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100272393 (zma-u.5 coexpression data)

CoexMap"100272393"


zmaLOC100272393 | Entrez gene ID : 100272393      
Species zma osa ath gma sly vvi ppo mtr hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001140345.1 [sequence] [blastp]
NP_001346541.1 [sequence] [blastp]
XP_020402962.1 [sequence] [blastp]
XP_020402964.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  mito 2,  cyto_pero 2,  cyto_plas 2  (predict for NP_001140345.1)
cyto 4,  nucl 2,  cyto_plas 2,  chlo 1  (predict for NP_001346541.1)
cyto 6,  chlo 1,  nucl 1,  plas 1,  chlo_mito 1,  cysk_nucl 1,  E.R._vacu 1  (predict for XP_020402962.1)
cyto 4,  nucl 4,  vacu 1,  E.R._vacu 1  (predict for XP_020402964.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001140345.1)
other 8  (predict for NP_001346541.1)
other 7,  chlo 3  (predict for XP_020402962.1)
other 7,  chlo 3  (predict for XP_020402964.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100272393
zma-r.6
for
100272393
zma-m.5
for
100272393
osa-u.5
for
4332490
ath-u.5
for
AT3G52260
gma-u.5
for
100810058
sly-u.5
for
101246017
vvi-u.5
for
100265032
ppo-u.5
for
7457877
mtr-u.5
for
11409136


Ortholog ID: 9537
Species zma sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi ghi sot cit nta nta cre
Symbol LOC100272393 LOC110432012 LOC4332490 LOC123092486 LOC123448930 LOC100842617 AT3G52260 LOC100810058 LOC101246017 LOC103860749 LOC100265032 LOC7457877 LOC11409136 LOC121230750 LOC107891176 LOC102596314 LOC102607668 LOC107814662 LOC107809259 CHLRE_16g689100v5
Function* uncharacterized LOC100272393 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5-like RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 Pseudouridine synthase family protein RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5 RNA pseudouridine synthase 5-like uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00510 N-Glycan biosynthesis 2
osa00513 Various types of N-glycan biosynthesis 2
osa04141 Protein processing in endoplasmic reticulum 2
osa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03450 Non-homologous end-joining 2
bdi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
gma00860 Porphyrin metabolism 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00280 Valine, leucine and isoleucine degradation 4
vvi00640 Propanoate metabolism 4
vvi00410 beta-Alanine metabolism 3
vvi01200 Carbon metabolism 3
vvi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 3
cit03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100272393 110432012 4332490 123092486 123448930 100842617 824391 100810058 101246017 103860749 100265032 7457877 11409136 121230750 107891176 102596314 102607668 107814662 107809259 5724809
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