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Orthologous genes in OrthoFinder**

Species Gene Description
 zma-u.5   100272459   RNA binding protein 
 zma-r.6   100272459   RNA binding protein 
 osa-u.5   4342081   RNA pseudouridine synthase 2, chloroplastic-like 
 ath-u.5   AT1G76050   Pseudouridine synthase family protein 
 gma-u.5   100810383   RNA pseudouridine synthase 2, chloroplastic 
 sly-u.5   101246422   RNA pseudouridine synthase 2, chloroplastic 
 vvi-u.5   100852977   RNA pseudouridine synthase 2, chloroplastic 
 ppo-u.5   7496900   RNA pseudouridine synthase 2, chloroplastic 
 mtr-u.5   11427408   RNA pseudouridine synthase 2, chloroplastic 

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Top 50 coexpressed genes to 100272459 (zma-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100272459 (zma-u.5 coexpression data)

CoexMap"100272459"


zmaLOC100272459 | Entrez gene ID : 100272459      
Species zma osa ath gma sly vvi ppo mtr bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (7 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1549 genes)  IEA  
Protein NP_001140404.1 [sequence] [blastp]
XP_008647484.1 [sequence] [blastp]
XP_008647485.1 [sequence] [blastp]
XP_008647486.1 [sequence] [blastp]
XP_020394410.1 [sequence] [blastp]
XP_020394411.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for NP_001140404.1)
chlo 9,  mito 1  (predict for XP_008647484.1)
chlo 9,  mito 1  (predict for XP_008647485.1)
chlo 9,  mito 1  (predict for XP_008647486.1)
chlo 9,  mito 1  (predict for XP_020394410.1)
chlo 9,  mito 1  (predict for XP_020394411.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001140404.1)
chlo 6  (predict for XP_008647484.1)
chlo 6  (predict for XP_008647485.1)
chlo 6  (predict for XP_008647486.1)
chlo 6  (predict for XP_020394410.1)
chlo 6  (predict for XP_020394411.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

zma-u.5
for
100272459
zma-r.6
for
100272459
osa-u.5
for
4342081
ath-u.5
for
AT1G76050
gma-u.5
for
100810383
sly-u.5
for
101246422
vvi-u.5
for
100852977
ppo-u.5
for
7496900
mtr-u.5
for
11427408


Ortholog ID: 11134
Species zma sbi osa tae tae hvu bdi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta cre
Symbol LOC100272459 LOC8065000 LOC4342081 LOC123160360 LOC123149656 LOC123409561 LOC100824777 AT1G76050 LOC100810383 LOC101246422 LOC103832049 LOC100852977 LOC7496900 LOC11427408 LOC107905545 LOC107937570 LOC106421521 LOC106406421 LOC102581156 LOC102619972 LOC107811616 CHLRE_02g078750v5
Function* RNA binding protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic Pseudouridine synthase family protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 2
mtr01212 Fatty acid metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100272459 8065000 4342081 123160360 123149656 123409561 100824777 843937 100810383 101246422 103832049 100852977 7496900 11427408 107905545 107937570 106421521 106406421 102581156 102619972 107811616 5727258
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