ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100274505	membrane protein
zma-r.6	100274505	membrane protein
zma-m.5	100274505	membrane protein
zma-u.5	103652669	RHOMBOID-like protein 1
zma-u.5	100284897	membrane protein
zma-u.5	100283507	membrane protein
sbi-r.1	8059480	RHOMBOID-like protein 2
sbi-r.1	8057858	RHOMBOID-like protein 2
sbi-r.1	8054878	RHOMBOID-like protein 2
osa-u.5	4349148	RHOMBOID-like protein 2
osa-u.5	4331402	RHOMBOID-like protein 2
osa-u.5	4347634	RHOMBOID-like protein 2
tae-r.2	123060123	RHOMBOID-like protein 1
tae-r.2	123152357	RHOMBOID-like protein 2
tae-r.2	123112772	RHOMBOID-like protein 2
hvu-r.1	123448272	RHOMBOID-like protein 2
hvu-r.1	123449923	RHOMBOID-like protein 2
hvu-r.1	123439346	RHOMBOID-like protein 1
bdi-r.1	100827999	RHOMBOID-like protein 2
bdi-r.1	100829865	RHOMBOID-like protein 6, mitochondrial
bdi-r.1	100834911	RHOMBOID-like protein 1
ath-u.5	RBL1	RHOMBOID-like 1
ath-u.5	RBL2	RHOMBOID-like 2
gma-u.5	100813345	RHOMBOID-like protein 2
gma-u.5	100809265	RHOMBOID-like protein 2
sly-u.5	101268356	RHOMBOID-like protein 2
sly-u.5	101258586	RHOMBOID-like protein 1
bra-r.6	103841301	RHOMBOID-like protein 4
bra-r.6	103838340	RHOMBOID-like protein 2
bra-r.6	103847074	RHOMBOID-like protein 3
vvi-u.5	100241704	RHOMBOID-like protein 1
vvi-u.5	100257915	RHOMBOID-like protein 1
ppo-u.5	7484388	RHOMBOID-like protein 2
ppo-u.5	7454931	RHOMBOID-like protein 1
mtr-u.5	11414014	RHOMBOID-like protein 1
mtr-u.5	11412678	RHOMBOID-like protein 2
ghi-r.1	107943710	RHOMBOID-like protein 4
bna-r.1	106366527	RHOMBOID-like protein 2
sot-r.1	102580896	RHOMBOID-like protein 2
cit-r.1	102624089	RHOMBOID-like protein 2
cit-r.1	102616784	RHOMBOID-like protein 2
cre-r.1	CHLRE_03g145527v5	uncharacterized protein

Top 50 coexpressed genes to 100274505 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100274505 (zma-u.5 coexpression data)

CoexMap"100274505"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006508 [list] [network] proteolysis

(984 genes)

IEA

GO CC

GO:0016020 [list] [network] membrane

(3751 genes)

IEA

GO MF

GO:0004252 [list] [network] serine-type endopeptidase activity

(139 genes)

IEA

Protein

NP_001142335.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 7, E.R. 1, vacu 1, golg 1, cyto_E.R. 1

(predict for NP_001142335.1)

Subcellular
localization
TargetP

other 9

(predict for NP_001142335.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100274505	zma-r.6 for 100274505	zma-m.5 for 100274505	zma-u.5 for 103652669	zma-u.5 for 100284897	zma-u.5 for 100283507	sbi-r.1 for 8059480	sbi-r.1 for 8057858	sbi-r.1 for 8054878	osa-u.5 for 4349148	osa-u.5 for 4331402	osa-u.5 for 4347634	tae-r.2 for 123060123	tae-r.2 for 123152357	tae-r.2 for 123112772	hvu-r.1 for 123448272	hvu-r.1 for 123449923	hvu-r.1 for 123439346	bdi-r.1 for 100827999	bdi-r.1 for 100829865	bdi-r.1 for 100834911	ath-u.5 for RBL1	ath-u.5 for RBL2	gma-u.5 for 100813345	gma-u.5 for 100809265	sly-u.5 for 101268356	sly-u.5 for 101258586	bra-r.6 for 103841301	bra-r.6 for 103838340	bra-r.6 for 103847074	vvi-u.5 for 100241704	vvi-u.5 for 100257915	ppo-u.5 for 7484388	ppo-u.5 for 7454931	mtr-u.5 for 11414014	mtr-u.5 for 11412678	ghi-r.1 for 107943710	bna-r.1 for 106366527	sot-r.1 for 102580896	cit-r.1 for 102624089	cit-r.1 for 102616784	cre-r.1 for CHLRE_03g145527v5

Ortholog

Ortholog ID: 228

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RBL1

RBL2

Function^*

uncharacterized LOC100194066

RHOMBOID-like protein 3

RHOMBOID-like protein 2

RHOMBOID-like protein 1

RHOMBOID-like protein 2

RHOMBOID-like protein 6, mitochondrial

RHOMBOID-like protein 2

RHOMBOID-like 1

RHOMBOID-like 2

RHOMBOID-like protein 2

inactive rhomboid protein 1-like

RHOMBOID-like protein 2

RHOMBOID-like protein 1

RHOMBOID-like protein 4

RHOMBOID-like protein 1

RHOMBOID-like protein 2

RHOMBOID-like protein 3

RHOMBOID-like protein 2

RHOMBOID-like protein 4

RHOMBOID-like protein 3

RHOMBOID-like protein 1

RHOMBOID-like protein 4

RHOMBOID-like protein 1

RHOMBOID-like protein 2

RHOMBOID-like protein 1

RHOMBOID-like protein 2

RHOMBOID-like protein 3

RHOMBOID-like protein 1

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	4
sbi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa01240	Biosynthesis of cofactors	2
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	4
osa01250	Biosynthesis of nucleotide sugars	4
osa00040	Pentose and glucuronate interconversions	3
osa00053	Ascorbate and aldarate metabolism	3
osa00541	Biosynthesis of various nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3
gma04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
vvi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00999	Biosynthesis of various plant secondary metabolites	2
ppo00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00520	Amino sugar and nucleotide sugar metabolism	3
mtr00040	Pentose and glucuronate interconversions	2
mtr00592	alpha-Linolenic acid metabolism	2
mtr01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	4
sot04145	Phagosome	2
sot04148	Efferocytosis	2
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
cit01230	Biosynthesis of amino acids	2
cit04016	MAPK signaling pathway - plant	2
cit04075	Plant hormone signal transduction	2
cit04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04626	Plant-pathogen interaction	8
nta04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04144	Endocytosis	3
cre03250	Viral life cycle - HIV-1	2
cre03272	Virion - Hepatitis viruses	2

Expression

Expression pattern

Entrez Gene ID^*

100194066

103654435

8059480

8057858

8076372

4346228

4336706

123124002

123091759

123190034

123449923

123427473

123400016

100836172

100842800

100824334

817453

842616

100813345

100809265

100784671

101268356

101258586

103841301

100241704

100257915

7479337

7454498

25499980

107889682

107962383

125585434

106440713

102601550

102624089

102621290

107779142

107814237

107811134

5721258

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	cre	nta
Paralog	6	3	3	3	3	3	2	2	2	3	2	2	2	1	1	1	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100274505 (zma-u.5 coexpression data)

Top 50 enrichment test to 100274505 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**