ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	100282221	cold acclimation protein COR413-PM1
zma-r.6	100282221	cold acclimation protein COR413-PM1
zma-u.5	542099	Cold-regulated 413 plasma membrane protein 2
sbi-r.1	8086182	cold-regulated 413 plasma membrane protein 2
osa-u.5	4334237	cold-regulated 413 plasma membrane protein 2
tae-r.2	123105151	cold-regulated 413 plasma membrane protein 1
tae-r.2	543255	cold-regulated 413 plasma membrane protein 1
tae-r.2	543353	cold-regulated 413 plasma membrane protein 1
hvu-r.1	123452401	cold-regulated 413 plasma membrane protein 1-like
hvu-r.1	123452399	cold-regulated 413 plasma membrane protein 1-like
bdi-r.1	100844112	cold-regulated 413 plasma membrane protein 1
ath-u.5	AT4G37220	Cold acclimation protein WCOR413 family
ath-u.5	COR413-PM1	cold regulated 413 plasma membrane 1
ath-u.5	COR413-PM2	cold-regulated 413-plasma membrane 2
gma-u.5	100817084	cold-regulated 413 plasma membrane protein 2
gma-u.5	100810337	cold-regulated 413 plasma membrane protein 2
gma-u.5	100811430	cold-regulated 413 plasma membrane protein 1
sly-u.5	101259505	cold-regulated 413 plasma membrane protein 2
sly-u.5	101259682	WCOR413-like plant cold acclimation protein
bra-r.6	103835009	cold-regulated 413 plasma membrane protein 4
bra-r.6	103860441	cold-regulated 413 plasma membrane protein 1-like
vvi-u.5	100248690	cold-regulated 413 plasma membrane protein 2
vvi-u.5	100267774	cold-regulated 413 plasma membrane protein 2
ppo-u.5	7456406	cold-regulated 413 plasma membrane protein 1
ppo-u.5	7480606	cold-regulated 413 plasma membrane protein 1
ppo-u.5	18101203	cold-regulated 413 plasma membrane protein 2
mtr-u.5	11414899	cold-regulated 413 plasma membrane protein 1
mtr-u.5	25482681	cold-regulated 413 plasma membrane protein 1
ghi-r.1	121209662	cold-regulated 413 plasma membrane protein 2
ghi-r.1	107898702	cold-regulated 413 plasma membrane protein 2
ghi-r.1	107911998	cold-regulated 413 plasma membrane protein 2
bna-r.1	125598313	cold-regulated 413 plasma membrane protein 4-like
bna-r.1	106451353	cold-regulated 413 plasma membrane protein 2-like
bna-r.1	106445618	cold-regulated 413 plasma membrane protein 1
sot-r.1	102589207	cold-regulated 413 plasma membrane protein 2-like
sot-r.1	102596410	cold-regulated 413 plasma membrane protein 2-like
cit-r.1	102620025	cold-regulated 413 plasma membrane protein 2
cit-r.1	102614347	cold-regulated 413 plasma membrane protein 1
nta-r.1	107819216	cold-regulated 413 plasma membrane protein 2
nta-r.1	107779465	cold-regulated 413 plasma membrane protein 1
nta-r.1	107820253	cold-regulated 413 plasma membrane protein 2-like

Top 50 coexpressed genes to 100282221 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 100282221 (zma-u.5 coexpression data)

CoexMap"100282221"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0016020 [list] [network] membrane

(3751 genes)

IEA

GO MF

Protein

NP_001148605.2 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, vacu 3, golg_plas 3, cyto_plas 3

(predict for NP_001148605.2)

Subcellular
localization
TargetP

other 8

(predict for NP_001148605.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 100282221	zma-r.6 for 100282221	zma-u.5 for 542099	sbi-r.1 for 8086182	osa-u.5 for 4334237	tae-r.2 for 123105151	tae-r.2 for 543255	tae-r.2 for 543353	hvu-r.1 for 123452401	hvu-r.1 for 123452399	bdi-r.1 for 100844112	ath-u.5 for AT4G37220	ath-u.5 for COR413-PM1	ath-u.5 for COR413-PM2	gma-u.5 for 100817084	gma-u.5 for 100810337	gma-u.5 for 100811430	sly-u.5 for 101259505	sly-u.5 for 101259682	bra-r.6 for 103835009	bra-r.6 for 103860441	vvi-u.5 for 100248690	vvi-u.5 for 100267774	ppo-u.5 for 7456406	ppo-u.5 for 7480606	ppo-u.5 for 18101203	mtr-u.5 for 11414899	mtr-u.5 for 25482681	ghi-r.1 for 121209662	ghi-r.1 for 107898702	ghi-r.1 for 107911998	bna-r.1 for 125598313	bna-r.1 for 106451353	bna-r.1 for 106445618	sot-r.1 for 102589207	sot-r.1 for 102596410	cit-r.1 for 102620025	cit-r.1 for 102614347	nta-r.1 for 107819216	nta-r.1 for 107779465	nta-r.1 for 107820253

Ortholog

Ortholog ID: 2376

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

cold acclimation protein COR413-PM1

Cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 1-like

cold-regulated 413 plasma membrane protein 1

Cold acclimation protein WCOR413 family

cold regulated 413 plasma membrane 1

cold-regulated 413-plasma membrane 2

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 2

WCOR413-like plant cold acclimation protein

cold-regulated 413 plasma membrane protein 4

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 2-like

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

cold-regulated 413 plasma membrane protein 2

cold-regulated 413 plasma membrane protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	5
zma04016	MAPK signaling pathway - plant	5
zma04075	Plant hormone signal transduction	5
zma04070	Phosphatidylinositol signaling system	4
zma00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	3
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04145	Phagosome	5
osa00190	Oxidative phosphorylation	4
osa04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00280	Valine, leucine and isoleucine degradation	8
ath00640	Propanoate metabolism	4
ath01210	2-Oxocarboxylic acid metabolism	4
ath01250	Biosynthesis of nucleotide sugars	3
ath00785	Lipoic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00190	Oxidative phosphorylation	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00280	Valine, leucine and isoleucine degradation	4
sly00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01230	Biosynthesis of amino acids	3
vvi00260	Glycine, serine and threonine metabolism	2
vvi00630	Glyoxylate and dicarboxylate metabolism	2
vvi00670	One carbon pool by folate	2
vvi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	6
ppo04016	MAPK signaling pathway - plant	5
ppo02010	ABC transporters	3
ppo00073	Cutin, suberine and wax biosynthesis	2
ppo04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00562	Inositol phosphate metabolism	2
ppo04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo00190	Oxidative phosphorylation	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00562	Inositol phosphate metabolism	2
mtr04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	4
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04075	Plant hormone signal transduction	12
ghi04016	MAPK signaling pathway - plant	2
ghi00562	Inositol phosphate metabolism	2
ghi04070	Phosphatidylinositol signaling system	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00052	Galactose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04712	Circadian rhythm - plant	4
nta00970	Aminoacyl-tRNA biosynthesis	2
nta04016	MAPK signaling pathway - plant	2
nta04075	Plant hormone signal transduction	2
nta04142	Lysosome	2

Expression

Expression pattern

Entrez Gene ID^*

100282221

542099

8086182

4334237

543255

543353

123122960

123452401

123452399

100844112

829876

816092

824247

100817084

100810337

100811430

101259505

101259682

103835009

103860669

100248690

100267774

7456406

7480606

18101203

11414899

25482681

25482682

121209662

107911998

107942145

106445618

106440012

106425620

102589207

102596410

102620025

102614347

107819216

107779465

107819619

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	1	3	2	1	3	3	2	2	2	3	2	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 100282221 (zma-u.5 coexpression data)

Top 50 enrichment test to 100282221 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**